Gene : Carub.0006s1145 C. rubella v1.1
Defline:  (1 of 3) K00928 - aspartate kinase (lysC) Genomic Order:  1145
Name:  ? Carub.0006s1145 Secondary Identifier:  ? PAC:39247905
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella HOMOSERSYN-PWY Capsella rubella pathologic  
Crubella PWY-3001 Capsella rubella pathologic  
Crubella PWY-5097 Capsella rubella pathologic  
Crubella PWY-724 Capsella rubella pathologic  
Crubella THRESYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1145 0.5kb upstream 0.5kb upstream 4015 true scaffold_6: 4248668-4252682 Capsella rubella
Carub.0006s1145 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 4248668-4249167 Capsella rubella
Carub.0006s1145 0.5kb downstream 0.5kb downstream 4015 true scaffold_6: 4249168-4253182 Capsella rubella
Carub.0006s1145 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 4252683-4253182 Capsella rubella
Carub.0006s1145 1.0kb upstream 1.0kb upstream 4515 true scaffold_6: 4248168-4252682 Capsella rubella
Carub.0006s1145 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 4248168-4249167 Capsella rubella
Carub.0006s1145 1.0kb downstream 1.0kb downstream 4515 true scaffold_6: 4249168-4253682 Capsella rubella
Carub.0006s1145 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 4252683-4253682 Capsella rubella
Carub.0006s1145 2.0kb upstream 2.0kb upstream 5515 true scaffold_6: 4247168-4252682 Capsella rubella
Carub.0006s1145 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 4247168-4249167 Capsella rubella
Carub.0006s1145 2.0kb downstream 2.0kb downstream 5515 true scaffold_6: 4249168-4254682 Capsella rubella
Carub.0006s1145 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 4252683-4254682 Capsella rubella
Carub.0006s1145 5.0kb upstream 5.0kb upstream 8515 true scaffold_6: 4244168-4252682 Capsella rubella
Carub.0006s1145 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 4244168-4249167 Capsella rubella
Carub.0006s1145 5.0kb downstream 5.0kb downstream 8515 true scaffold_6: 4249168-4257682 Capsella rubella
Carub.0006s1145 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 4252683-4257682 Capsella rubella
Carub.0006s1145 10.0kb upstream 10.0kb upstream 13515 true scaffold_6: 4239168-4252682 Capsella rubella
Carub.0006s1145 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 4239168-4249167 Capsella rubella
Carub.0006s1145 10.0kb downstream 10.0kb downstream 13515 true scaffold_6: 4249168-4262682 Capsella rubella
Carub.0006s1145 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 4252683-4262682 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374428 5261 Brassicaceae View MSA
123829036 5264 Brassicales-Malvales View MSA
124321571 5266 SBM View MSA
124169039 5268 Malvidae View MSA
124064113 5270 Rosid View MSA
123738935 5271 Pentapetalae View MSA
122796231 5272 Eudicot View MSA
122050797 5273 Angiosperm View MSA
121346150 5274 Embryophyte View MSA
123424787 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain