Gene : Carub.0007s3553 C. rubella v1.1
Defline:  (1 of 3) PTHR31517:SF11 - PEROXIDASE 31-RELATED Genomic Order:  3553
Name:  ? Carub.0007s3553 Secondary Identifier:  ? PAC:39235801
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5466 Capsella rubella pathologic  
Crubella PWY-7214 Capsella rubella pathologic  
Crubella PWY-7445 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s3553 0.5kb upstream 0.5kb upstream 1980 true scaffold_7: 16223094-16225073 Capsella rubella
Carub.0007s3553 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 16223094-16223593 Capsella rubella
Carub.0007s3553 0.5kb downstream 0.5kb downstream 1980 true scaffold_7: 16223594-16225573 Capsella rubella
Carub.0007s3553 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 16225074-16225573 Capsella rubella
Carub.0007s3553 1.0kb upstream 1.0kb upstream 2480 true scaffold_7: 16222594-16225073 Capsella rubella
Carub.0007s3553 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 16222594-16223593 Capsella rubella
Carub.0007s3553 1.0kb downstream 1.0kb downstream 2480 true scaffold_7: 16223594-16226073 Capsella rubella
Carub.0007s3553 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 16225074-16226073 Capsella rubella
Carub.0007s3553 2.0kb upstream 2.0kb upstream 3480 true scaffold_7: 16221594-16225073 Capsella rubella
Carub.0007s3553 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 16221594-16223593 Capsella rubella
Carub.0007s3553 2.0kb downstream 2.0kb downstream 3480 true scaffold_7: 16223594-16227073 Capsella rubella
Carub.0007s3553 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 16225074-16227073 Capsella rubella
Carub.0007s3553 5.0kb upstream 5.0kb upstream 6480 true scaffold_7: 16218594-16225073 Capsella rubella
Carub.0007s3553 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 16218594-16223593 Capsella rubella
Carub.0007s3553 5.0kb downstream 5.0kb downstream 6480 true scaffold_7: 16223594-16230073 Capsella rubella
Carub.0007s3553 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 16225074-16230073 Capsella rubella
Carub.0007s3553 10.0kb upstream 10.0kb upstream 11480 true scaffold_7: 16213594-16225073 Capsella rubella
Carub.0007s3553 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 16213594-16223593 Capsella rubella
Carub.0007s3553 10.0kb downstream 10.0kb downstream 11480 true scaffold_7: 16223594-16235073 Capsella rubella
Carub.0007s3553 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 16225074-16235073 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380418 5261 Brassicaceae View MSA
123835779 5264 Brassicales-Malvales View MSA
124346299 5266 SBM View MSA
124240815 5268 Malvidae View MSA
124069813 5270 Rosid View MSA
123741716 5271 Pentapetalae View MSA
122795989 5272 Eudicot View MSA
122048017 5273 Angiosperm View MSA
121351674 5274 Embryophyte View MSA
123426672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain