Gene : Carub.0007s3738 C. rubella v1.1
Defline:  (1 of 1) 4.2.1.122//4.2.1.20 - Tryptophan synthase (indole-salvaging) / Tryptophan synthase beta-2 // Tryptophan synthase / Tryptophan synthetase Genomic Order:  3738
Name:  ? Carub.0007s3738 Secondary Identifier:  ? PAC:39233788
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRPSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s3738 0.5kb upstream 0.5kb upstream 3393 true scaffold_7: 17091445-17094837 Capsella rubella
Carub.0007s3738 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 17094338-17094837 Capsella rubella
Carub.0007s3738 0.5kb downstream 0.5kb downstream 3393 true scaffold_7: 17090945-17094337 Capsella rubella
Carub.0007s3738 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 17090945-17091444 Capsella rubella
Carub.0007s3738 1.0kb upstream 1.0kb upstream 3893 true scaffold_7: 17091445-17095337 Capsella rubella
Carub.0007s3738 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 17094338-17095337 Capsella rubella
Carub.0007s3738 1.0kb downstream 1.0kb downstream 3893 true scaffold_7: 17090445-17094337 Capsella rubella
Carub.0007s3738 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 17090445-17091444 Capsella rubella
Carub.0007s3738 2.0kb upstream 2.0kb upstream 4893 true scaffold_7: 17091445-17096337 Capsella rubella
Carub.0007s3738 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 17094338-17096337 Capsella rubella
Carub.0007s3738 2.0kb downstream 2.0kb downstream 4893 true scaffold_7: 17089445-17094337 Capsella rubella
Carub.0007s3738 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 17089445-17091444 Capsella rubella
Carub.0007s3738 5.0kb upstream 5.0kb upstream 7893 true scaffold_7: 17091445-17099337 Capsella rubella
Carub.0007s3738 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 17094338-17099337 Capsella rubella
Carub.0007s3738 5.0kb downstream 5.0kb downstream 7893 true scaffold_7: 17086445-17094337 Capsella rubella
Carub.0007s3738 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 17086445-17091444 Capsella rubella
Carub.0007s3738 10.0kb upstream 10.0kb upstream 12893 true scaffold_7: 17091445-17104337 Capsella rubella
Carub.0007s3738 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 17094338-17104337 Capsella rubella
Carub.0007s3738 10.0kb downstream 10.0kb downstream 12893 true scaffold_7: 17081445-17094337 Capsella rubella
Carub.0007s3738 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 17081445-17091444 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361584 5261 Brassicaceae View MSA
123840024 5264 Brassicales-Malvales View MSA
124344821 5266 SBM View MSA
124242166 5268 Malvidae View MSA
124065122 5270 Rosid View MSA
123740538 5271 Pentapetalae View MSA
122790993 5272 Eudicot View MSA
122043348 5273 Angiosperm View MSA
121348084 5274 Embryophyte View MSA
123380724 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain