Gene : Carub.0007s3484 C. rubella v1.1
Defline:  (1 of 12) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  3484
Name:  ? Carub.0007s3484 Secondary Identifier:  ? PAC:39233047
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s3484 0.5kb upstream 0.5kb upstream 951 true scaffold_7: 15897238-15898188 Capsella rubella
Carub.0007s3484 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 15897238-15897737 Capsella rubella
Carub.0007s3484 0.5kb downstream 0.5kb downstream 951 true scaffold_7: 15897738-15898688 Capsella rubella
Carub.0007s3484 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 15898189-15898688 Capsella rubella
Carub.0007s3484 1.0kb upstream 1.0kb upstream 1451 true scaffold_7: 15896738-15898188 Capsella rubella
Carub.0007s3484 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 15896738-15897737 Capsella rubella
Carub.0007s3484 1.0kb downstream 1.0kb downstream 1451 true scaffold_7: 15897738-15899188 Capsella rubella
Carub.0007s3484 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 15898189-15899188 Capsella rubella
Carub.0007s3484 2.0kb upstream 2.0kb upstream 2451 true scaffold_7: 15895738-15898188 Capsella rubella
Carub.0007s3484 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 15895738-15897737 Capsella rubella
Carub.0007s3484 2.0kb downstream 2.0kb downstream 2451 true scaffold_7: 15897738-15900188 Capsella rubella
Carub.0007s3484 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 15898189-15900188 Capsella rubella
Carub.0007s3484 5.0kb upstream 5.0kb upstream 5451 true scaffold_7: 15892738-15898188 Capsella rubella
Carub.0007s3484 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 15892738-15897737 Capsella rubella
Carub.0007s3484 5.0kb downstream 5.0kb downstream 5451 true scaffold_7: 15897738-15903188 Capsella rubella
Carub.0007s3484 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 15898189-15903188 Capsella rubella
Carub.0007s3484 10.0kb upstream 10.0kb upstream 10451 true scaffold_7: 15887738-15898188 Capsella rubella
Carub.0007s3484 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 15887738-15897737 Capsella rubella
Carub.0007s3484 10.0kb downstream 10.0kb downstream 10451 true scaffold_7: 15897738-15908188 Capsella rubella
Carub.0007s3484 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 15898189-15908188 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376328 5261 Brassicaceae View MSA
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain