Gene : Carub.0007s3268 C. rubella v1.1
Defline:  (1 of 1) K03934 - NADH dehydrogenase (ubiquinone) Fe-S protein 1 (NDUFS1) Genomic Order:  3268
Name:  ? Carub.0007s3268 Secondary Identifier:  ? PAC:39234900
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-3781 Capsella rubella pathologic  
Crubella PWY-4302 Capsella rubella pathologic  
Crubella PWY-5083 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s3268 0.5kb upstream 0.5kb upstream 3901 true scaffold_7: 14809615-14813515 Capsella rubella
Carub.0007s3268 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 14809615-14810114 Capsella rubella
Carub.0007s3268 0.5kb downstream 0.5kb downstream 3901 true scaffold_7: 14810115-14814015 Capsella rubella
Carub.0007s3268 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 14813516-14814015 Capsella rubella
Carub.0007s3268 1.0kb upstream 1.0kb upstream 4401 true scaffold_7: 14809115-14813515 Capsella rubella
Carub.0007s3268 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 14809115-14810114 Capsella rubella
Carub.0007s3268 1.0kb downstream 1.0kb downstream 4401 true scaffold_7: 14810115-14814515 Capsella rubella
Carub.0007s3268 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 14813516-14814515 Capsella rubella
Carub.0007s3268 2.0kb upstream 2.0kb upstream 5401 true scaffold_7: 14808115-14813515 Capsella rubella
Carub.0007s3268 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 14808115-14810114 Capsella rubella
Carub.0007s3268 2.0kb downstream 2.0kb downstream 5401 true scaffold_7: 14810115-14815515 Capsella rubella
Carub.0007s3268 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 14813516-14815515 Capsella rubella
Carub.0007s3268 5.0kb upstream 5.0kb upstream 8401 true scaffold_7: 14805115-14813515 Capsella rubella
Carub.0007s3268 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 14805115-14810114 Capsella rubella
Carub.0007s3268 5.0kb downstream 5.0kb downstream 8401 true scaffold_7: 14810115-14818515 Capsella rubella
Carub.0007s3268 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 14813516-14818515 Capsella rubella
Carub.0007s3268 10.0kb upstream 10.0kb upstream 13401 true scaffold_7: 14800115-14813515 Capsella rubella
Carub.0007s3268 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 14800115-14810114 Capsella rubella
Carub.0007s3268 10.0kb downstream 10.0kb downstream 13401 true scaffold_7: 14810115-14823515 Capsella rubella
Carub.0007s3268 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 14813516-14823515 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364097 5261 Brassicaceae View MSA
123836593 5264 Brassicales-Malvales View MSA
124336428 5266 SBM View MSA
124244950 5268 Malvidae View MSA
124062856 5270 Rosid View MSA
123737847 5271 Pentapetalae View MSA
122786481 5272 Eudicot View MSA
122044121 5273 Angiosperm View MSA
121350903 5274 Embryophyte View MSA
123424434 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain