Gene : Carub.0002s1417 C. rubella v1.1
Defline:  (1 of 1) K02723 - photosystem II PsbY protein (psbY) Genomic Order:  1417
Name:  ? Carub.0002s1417 Secondary Identifier:  ? PAC:39245004
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PHOTOALL-PWY Capsella rubella pathologic  
Crubella PWY-101 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s1417 0.5kb upstream 0.5kb upstream 1354 true scaffold_2: 8738730-8740083 Capsella rubella
Carub.0002s1417 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 8739584-8740083 Capsella rubella
Carub.0002s1417 0.5kb downstream 0.5kb downstream 1354 true scaffold_2: 8738230-8739583 Capsella rubella
Carub.0002s1417 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 8738230-8738729 Capsella rubella
Carub.0002s1417 1.0kb upstream 1.0kb upstream 1854 true scaffold_2: 8738730-8740583 Capsella rubella
Carub.0002s1417 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 8739584-8740583 Capsella rubella
Carub.0002s1417 1.0kb downstream 1.0kb downstream 1854 true scaffold_2: 8737730-8739583 Capsella rubella
Carub.0002s1417 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 8737730-8738729 Capsella rubella
Carub.0002s1417 2.0kb upstream 2.0kb upstream 2854 true scaffold_2: 8738730-8741583 Capsella rubella
Carub.0002s1417 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 8739584-8741583 Capsella rubella
Carub.0002s1417 2.0kb downstream 2.0kb downstream 2854 true scaffold_2: 8736730-8739583 Capsella rubella
Carub.0002s1417 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 8736730-8738729 Capsella rubella
Carub.0002s1417 5.0kb upstream 5.0kb upstream 5854 true scaffold_2: 8738730-8744583 Capsella rubella
Carub.0002s1417 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 8739584-8744583 Capsella rubella
Carub.0002s1417 5.0kb downstream 5.0kb downstream 5854 true scaffold_2: 8733730-8739583 Capsella rubella
Carub.0002s1417 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 8733730-8738729 Capsella rubella
Carub.0002s1417 10.0kb upstream 10.0kb upstream 10854 true scaffold_2: 8738730-8749583 Capsella rubella
Carub.0002s1417 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 8739584-8749583 Capsella rubella
Carub.0002s1417 10.0kb downstream 10.0kb downstream 10854 true scaffold_2: 8728730-8739583 Capsella rubella
Carub.0002s1417 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 8728730-8738729 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361908 5261 Brassicaceae View MSA
123839306 5264 Brassicales-Malvales View MSA
124346092 5266 SBM View MSA
124244103 5268 Malvidae View MSA
124068149 5270 Rosid View MSA
123737018 5271 Pentapetalae View MSA
122795977 5272 Eudicot View MSA
122044260 5273 Angiosperm View MSA
121349394 5274 Embryophyte View MSA
123426328 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain