Gene : Carub.0002s1747 C. rubella v1.1
Defline:  (1 of 3) K01835 - phosphoglucomutase (pgm) Genomic Order:  1747
Name:  ? Carub.0002s1747 Secondary Identifier:  ? PAC:39245678
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella GLUCOSE1PMETAB-PWY Capsella rubella pathologic  
Crubella GLYCOGENSYNTH-PWY Capsella rubella pathologic  
Crubella PWY-3801 Capsella rubella pathologic  
Crubella PWY-622 Capsella rubella pathologic  
Crubella PWY66-422 Capsella rubella pathologic  
Crubella PWY-7238 Capsella rubella pathologic  
Crubella PWY-7343 Capsella rubella pathologic  
Crubella SUCSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s1747 0.5kb upstream 0.5kb upstream 4607 true scaffold_2: 10137990-10142596 Capsella rubella
Carub.0002s1747 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 10142097-10142596 Capsella rubella
Carub.0002s1747 0.5kb downstream 0.5kb downstream 4607 true scaffold_2: 10137490-10142096 Capsella rubella
Carub.0002s1747 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 10137490-10137989 Capsella rubella
Carub.0002s1747 1.0kb upstream 1.0kb upstream 5107 true scaffold_2: 10137990-10143096 Capsella rubella
Carub.0002s1747 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 10142097-10143096 Capsella rubella
Carub.0002s1747 1.0kb downstream 1.0kb downstream 5107 true scaffold_2: 10136990-10142096 Capsella rubella
Carub.0002s1747 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 10136990-10137989 Capsella rubella
Carub.0002s1747 2.0kb upstream 2.0kb upstream 6107 true scaffold_2: 10137990-10144096 Capsella rubella
Carub.0002s1747 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 10142097-10144096 Capsella rubella
Carub.0002s1747 2.0kb downstream 2.0kb downstream 6107 true scaffold_2: 10135990-10142096 Capsella rubella
Carub.0002s1747 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 10135990-10137989 Capsella rubella
Carub.0002s1747 5.0kb upstream 5.0kb upstream 9107 true scaffold_2: 10137990-10147096 Capsella rubella
Carub.0002s1747 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 10142097-10147096 Capsella rubella
Carub.0002s1747 5.0kb downstream 5.0kb downstream 9107 true scaffold_2: 10132990-10142096 Capsella rubella
Carub.0002s1747 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 10132990-10137989 Capsella rubella
Carub.0002s1747 10.0kb upstream 10.0kb upstream 14107 true scaffold_2: 10137990-10152096 Capsella rubella
Carub.0002s1747 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 10142097-10152096 Capsella rubella
Carub.0002s1747 10.0kb downstream 10.0kb downstream 14107 true scaffold_2: 10127990-10142096 Capsella rubella
Carub.0002s1747 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 10127990-10137989 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376242 5261 Brassicaceae View MSA
123835209 5264 Brassicales-Malvales View MSA
124342115 5266 SBM View MSA
124253593 5268 Malvidae View MSA
124065382 5270 Rosid View MSA
123740036 5271 Pentapetalae View MSA
122791577 5272 Eudicot View MSA
122046067 5273 Angiosperm View MSA
121346784 5274 Embryophyte View MSA
123426013 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain