Gene : Carub.0002s1337 C. rubella v1.1
Defline:  (1 of 1) 5.3.99.9 - Neoxanthin synthase / NSY Genomic Order:  1337
Name:  ? Carub.0002s1337 Secondary Identifier:  ? PAC:39245488
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6809 Capsella rubella pathologic  
Crubella PWY-695 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s1337 0.5kb upstream 0.5kb upstream 2160 true scaffold_2: 8342583-8344742 Capsella rubella
Carub.0002s1337 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 8344243-8344742 Capsella rubella
Carub.0002s1337 0.5kb downstream 0.5kb downstream 2160 true scaffold_2: 8342083-8344242 Capsella rubella
Carub.0002s1337 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 8342083-8342582 Capsella rubella
Carub.0002s1337 1.0kb upstream 1.0kb upstream 2660 true scaffold_2: 8342583-8345242 Capsella rubella
Carub.0002s1337 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 8344243-8345242 Capsella rubella
Carub.0002s1337 1.0kb downstream 1.0kb downstream 2660 true scaffold_2: 8341583-8344242 Capsella rubella
Carub.0002s1337 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 8341583-8342582 Capsella rubella
Carub.0002s1337 2.0kb upstream 2.0kb upstream 3660 true scaffold_2: 8342583-8346242 Capsella rubella
Carub.0002s1337 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 8344243-8346242 Capsella rubella
Carub.0002s1337 2.0kb downstream 2.0kb downstream 3660 true scaffold_2: 8340583-8344242 Capsella rubella
Carub.0002s1337 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 8340583-8342582 Capsella rubella
Carub.0002s1337 5.0kb upstream 5.0kb upstream 6660 true scaffold_2: 8342583-8349242 Capsella rubella
Carub.0002s1337 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 8344243-8349242 Capsella rubella
Carub.0002s1337 5.0kb downstream 5.0kb downstream 6660 true scaffold_2: 8337583-8344242 Capsella rubella
Carub.0002s1337 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 8337583-8342582 Capsella rubella
Carub.0002s1337 10.0kb upstream 10.0kb upstream 11660 true scaffold_2: 8342583-8354242 Capsella rubella
Carub.0002s1337 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 8344243-8354242 Capsella rubella
Carub.0002s1337 10.0kb downstream 10.0kb downstream 11660 true scaffold_2: 8332583-8344242 Capsella rubella
Carub.0002s1337 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 8332583-8342582 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362178 5261 Brassicaceae View MSA
123832925 5264 Brassicales-Malvales View MSA
124339377 5266 SBM View MSA
124248470 5268 Malvidae View MSA
124062178 5270 Rosid View MSA
123748588 5271 Pentapetalae View MSA
122790006 5272 Eudicot View MSA
122047205 5273 Angiosperm View MSA
121346000 5274 Embryophyte View MSA
123425892 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain