Gene : Carub.0006s1017 C. rubella v1.1
Defline:  (1 of 2) PTHR23406//PTHR23406:SF31 - MALIC ENZYME-RELATED // NADP-DEPENDENT MALIC ENZYME 2-RELATED Genomic Order:  1017
Name:  ? Carub.0006s1017 Secondary Identifier:  ? PAC:39248701
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella GLUCONEO-PWY Capsella rubella pathologic  
Crubella PWY-241 Capsella rubella pathologic  
Crubella PWY-7117 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1017 0.5kb upstream 0.5kb upstream 4591 true scaffold_6: 3715390-3719980 Capsella rubella
Carub.0006s1017 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 3715390-3715889 Capsella rubella
Carub.0006s1017 0.5kb downstream 0.5kb downstream 4591 true scaffold_6: 3715890-3720480 Capsella rubella
Carub.0006s1017 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 3719981-3720480 Capsella rubella
Carub.0006s1017 1.0kb upstream 1.0kb upstream 5091 true scaffold_6: 3714890-3719980 Capsella rubella
Carub.0006s1017 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 3714890-3715889 Capsella rubella
Carub.0006s1017 1.0kb downstream 1.0kb downstream 5091 true scaffold_6: 3715890-3720980 Capsella rubella
Carub.0006s1017 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 3719981-3720980 Capsella rubella
Carub.0006s1017 2.0kb upstream 2.0kb upstream 6091 true scaffold_6: 3713890-3719980 Capsella rubella
Carub.0006s1017 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 3713890-3715889 Capsella rubella
Carub.0006s1017 2.0kb downstream 2.0kb downstream 6091 true scaffold_6: 3715890-3721980 Capsella rubella
Carub.0006s1017 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 3719981-3721980 Capsella rubella
Carub.0006s1017 5.0kb upstream 5.0kb upstream 9091 true scaffold_6: 3710890-3719980 Capsella rubella
Carub.0006s1017 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 3710890-3715889 Capsella rubella
Carub.0006s1017 5.0kb downstream 5.0kb downstream 9091 true scaffold_6: 3715890-3724980 Capsella rubella
Carub.0006s1017 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 3719981-3724980 Capsella rubella
Carub.0006s1017 10.0kb upstream 10.0kb upstream 14091 true scaffold_6: 3705890-3719980 Capsella rubella
Carub.0006s1017 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 3705890-3715889 Capsella rubella
Carub.0006s1017 10.0kb downstream 10.0kb downstream 14091 true scaffold_6: 3715890-3729980 Capsella rubella
Carub.0006s1017 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 3719981-3729980 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380041 5261 Brassicaceae View MSA
123837048 5264 Brassicales-Malvales View MSA
124345373 5266 SBM View MSA
124247919 5268 Malvidae View MSA
124068705 5270 Rosid View MSA
123751350 5271 Pentapetalae View MSA
122794130 5272 Eudicot View MSA
122042224 5273 Angiosperm View MSA
121345569 5274 Embryophyte View MSA
123428715 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain