Gene : Carub.0002s1597 C. rubella v1.1
Defline:  (1 of 3) 5.4.99.5 - Chorismate mutase / Hydroxyphenylpyruvate synthase Genomic Order:  1597
Name:  ? Carub.0002s1597 Secondary Identifier:  ? PAC:39243434
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-3461 Capsella rubella pathologic  
Crubella PWY-3462 Capsella rubella pathologic  
Crubella PWY-3481 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s1597 0.5kb upstream 0.5kb upstream 2647 true scaffold_2: 9488844-9491490 Capsella rubella
Carub.0002s1597 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 9488844-9489343 Capsella rubella
Carub.0002s1597 0.5kb downstream 0.5kb downstream 2647 true scaffold_2: 9489344-9491990 Capsella rubella
Carub.0002s1597 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 9491491-9491990 Capsella rubella
Carub.0002s1597 1.0kb upstream 1.0kb upstream 3147 true scaffold_2: 9488344-9491490 Capsella rubella
Carub.0002s1597 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 9488344-9489343 Capsella rubella
Carub.0002s1597 1.0kb downstream 1.0kb downstream 3147 true scaffold_2: 9489344-9492490 Capsella rubella
Carub.0002s1597 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 9491491-9492490 Capsella rubella
Carub.0002s1597 2.0kb upstream 2.0kb upstream 4147 true scaffold_2: 9487344-9491490 Capsella rubella
Carub.0002s1597 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 9487344-9489343 Capsella rubella
Carub.0002s1597 2.0kb downstream 2.0kb downstream 4147 true scaffold_2: 9489344-9493490 Capsella rubella
Carub.0002s1597 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 9491491-9493490 Capsella rubella
Carub.0002s1597 5.0kb upstream 5.0kb upstream 7147 true scaffold_2: 9484344-9491490 Capsella rubella
Carub.0002s1597 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 9484344-9489343 Capsella rubella
Carub.0002s1597 5.0kb downstream 5.0kb downstream 7147 true scaffold_2: 9489344-9496490 Capsella rubella
Carub.0002s1597 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 9491491-9496490 Capsella rubella
Carub.0002s1597 10.0kb upstream 10.0kb upstream 12147 true scaffold_2: 9479344-9491490 Capsella rubella
Carub.0002s1597 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 9479344-9489343 Capsella rubella
Carub.0002s1597 10.0kb downstream 10.0kb downstream 12147 true scaffold_2: 9489344-9501490 Capsella rubella
Carub.0002s1597 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 9491491-9501490 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041201 5273 Angiosperm View MSA
122377151 5261 Brassicaceae View MSA
123835152 5264 Brassicales-Malvales View MSA
124322009 5266 SBM View MSA
124252605 5268 Malvidae View MSA
124071158 5270 Rosid View MSA
123736644 5271 Pentapetalae View MSA
122792454 5272 Eudicot View MSA
121347234 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain