Gene : Carub.0002s1552 C. rubella v1.1
Defline:  (1 of 1) K14759 - isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / O-succinylbenzoate synthase (PHYLLO) Genomic Order:  1552
Name:  ? Carub.0002s1552 Secondary Identifier:  ? PAC:39244335
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5837 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s1552 0.5kb upstream 0.5kb upstream 6611 true scaffold_2: 9305755-9312365 Capsella rubella
Carub.0002s1552 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 9305755-9306254 Capsella rubella
Carub.0002s1552 0.5kb downstream 0.5kb downstream 6611 true scaffold_2: 9306255-9312865 Capsella rubella
Carub.0002s1552 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 9312366-9312865 Capsella rubella
Carub.0002s1552 1.0kb upstream 1.0kb upstream 7111 true scaffold_2: 9305255-9312365 Capsella rubella
Carub.0002s1552 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 9305255-9306254 Capsella rubella
Carub.0002s1552 1.0kb downstream 1.0kb downstream 7111 true scaffold_2: 9306255-9313365 Capsella rubella
Carub.0002s1552 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 9312366-9313365 Capsella rubella
Carub.0002s1552 2.0kb upstream 2.0kb upstream 8111 true scaffold_2: 9304255-9312365 Capsella rubella
Carub.0002s1552 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 9304255-9306254 Capsella rubella
Carub.0002s1552 2.0kb downstream 2.0kb downstream 8111 true scaffold_2: 9306255-9314365 Capsella rubella
Carub.0002s1552 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 9312366-9314365 Capsella rubella
Carub.0002s1552 5.0kb upstream 5.0kb upstream 11111 true scaffold_2: 9301255-9312365 Capsella rubella
Carub.0002s1552 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 9301255-9306254 Capsella rubella
Carub.0002s1552 5.0kb downstream 5.0kb downstream 11111 true scaffold_2: 9306255-9317365 Capsella rubella
Carub.0002s1552 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 9312366-9317365 Capsella rubella
Carub.0002s1552 10.0kb upstream 10.0kb upstream 16111 true scaffold_2: 9296255-9312365 Capsella rubella
Carub.0002s1552 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 9296255-9306254 Capsella rubella
Carub.0002s1552 10.0kb downstream 10.0kb downstream 16111 true scaffold_2: 9306255-9322365 Capsella rubella
Carub.0002s1552 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 9312366-9322365 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122336411 5261 Brassicaceae Singleton cluster - no MSA
123777129 5264 Brassicales-Malvales Singleton cluster - no MSA
124275503 5266 SBM Singleton cluster - no MSA
124252749 5268 Malvidae View MSA
124050387 5270 Rosid View MSA
123744882 5271 Pentapetalae View MSA
122788106 5272 Eudicot View MSA
122043367 5273 Angiosperm View MSA
121345465 5274 Embryophyte View MSA
123425711 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain