Gene : Carub.0002s0976 C. rubella v1.1
Defline:  (1 of 1) K02703 - photosystem II P680 reaction center D1 protein (psbA) Genomic Order:  976
Name:  ? Carub.0002s0976 Secondary Identifier:  ? PAC:39244522
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PHOTOALL-PWY Capsella rubella pathologic  
Crubella PWY-101 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s0976 0.5kb upstream 0.5kb upstream 695 true scaffold_2: 5559891-5560585 Capsella rubella
Carub.0002s0976 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 5560086-5560585 Capsella rubella
Carub.0002s0976 0.5kb downstream 0.5kb downstream 695 true scaffold_2: 5559391-5560085 Capsella rubella
Carub.0002s0976 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 5559391-5559890 Capsella rubella
Carub.0002s0976 1.0kb upstream 1.0kb upstream 1195 true scaffold_2: 5559891-5561085 Capsella rubella
Carub.0002s0976 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 5560086-5561085 Capsella rubella
Carub.0002s0976 1.0kb downstream 1.0kb downstream 1195 true scaffold_2: 5558891-5560085 Capsella rubella
Carub.0002s0976 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 5558891-5559890 Capsella rubella
Carub.0002s0976 2.0kb upstream 2.0kb upstream 2195 true scaffold_2: 5559891-5562085 Capsella rubella
Carub.0002s0976 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 5560086-5562085 Capsella rubella
Carub.0002s0976 2.0kb downstream 2.0kb downstream 2195 true scaffold_2: 5557891-5560085 Capsella rubella
Carub.0002s0976 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 5557891-5559890 Capsella rubella
Carub.0002s0976 5.0kb upstream 5.0kb upstream 5195 true scaffold_2: 5559891-5565085 Capsella rubella
Carub.0002s0976 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 5560086-5565085 Capsella rubella
Carub.0002s0976 5.0kb downstream 5.0kb downstream 5195 true scaffold_2: 5554891-5560085 Capsella rubella
Carub.0002s0976 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 5554891-5559890 Capsella rubella
Carub.0002s0976 10.0kb upstream 10.0kb upstream 10195 true scaffold_2: 5559891-5570085 Capsella rubella
Carub.0002s0976 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 5560086-5570085 Capsella rubella
Carub.0002s0976 10.0kb downstream 10.0kb downstream 10195 true scaffold_2: 5549891-5560085 Capsella rubella
Carub.0002s0976 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 5549891-5559890 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122336435 5261 Brassicaceae Singleton cluster - no MSA
123777152 5264 Brassicales-Malvales Singleton cluster - no MSA
124275525 5266 SBM Singleton cluster - no MSA
124252674 5268 Malvidae View MSA
123952791 5270 Rosid View MSA
123750687 5271 Pentapetalae View MSA
122795300 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain