Gene : Carub.0002s1011 C. rubella v1.1
Defline:  (1 of 1) 2.1.1.95 - Tocopherol O-methyltransferase Genomic Order:  1011
Name:  ? Carub.0002s1011 Secondary Identifier:  ? PAC:39243284
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1422 Capsella rubella pathologic  
Crubella PWY-7436 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s1011 0.5kb upstream 0.5kb upstream 2395 true scaffold_2: 6112373-6114767 Capsella rubella
Carub.0002s1011 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 6114268-6114767 Capsella rubella
Carub.0002s1011 0.5kb downstream 0.5kb downstream 2395 true scaffold_2: 6111873-6114267 Capsella rubella
Carub.0002s1011 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 6111873-6112372 Capsella rubella
Carub.0002s1011 1.0kb upstream 1.0kb upstream 2895 true scaffold_2: 6112373-6115267 Capsella rubella
Carub.0002s1011 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 6114268-6115267 Capsella rubella
Carub.0002s1011 1.0kb downstream 1.0kb downstream 2895 true scaffold_2: 6111373-6114267 Capsella rubella
Carub.0002s1011 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 6111373-6112372 Capsella rubella
Carub.0002s1011 2.0kb upstream 2.0kb upstream 3895 true scaffold_2: 6112373-6116267 Capsella rubella
Carub.0002s1011 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 6114268-6116267 Capsella rubella
Carub.0002s1011 2.0kb downstream 2.0kb downstream 3895 true scaffold_2: 6110373-6114267 Capsella rubella
Carub.0002s1011 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 6110373-6112372 Capsella rubella
Carub.0002s1011 5.0kb upstream 5.0kb upstream 6895 true scaffold_2: 6112373-6119267 Capsella rubella
Carub.0002s1011 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 6114268-6119267 Capsella rubella
Carub.0002s1011 5.0kb downstream 5.0kb downstream 6895 true scaffold_2: 6107373-6114267 Capsella rubella
Carub.0002s1011 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 6107373-6112372 Capsella rubella
Carub.0002s1011 10.0kb upstream 10.0kb upstream 11895 true scaffold_2: 6112373-6124267 Capsella rubella
Carub.0002s1011 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 6114268-6124267 Capsella rubella
Carub.0002s1011 10.0kb downstream 10.0kb downstream 11895 true scaffold_2: 6102373-6114267 Capsella rubella
Carub.0002s1011 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 6102373-6112372 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371725 5261 Brassicaceae View MSA
123839002 5264 Brassicales-Malvales View MSA
124342588 5266 SBM View MSA
124238021 5268 Malvidae View MSA
124067151 5270 Rosid View MSA
123747323 5271 Pentapetalae View MSA
122786433 5272 Eudicot View MSA
122044817 5273 Angiosperm View MSA
121347406 5274 Embryophyte View MSA
123427925 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain