Gene : Carub.0002s1119 C. rubella v1.1
Defline:  (1 of 1) PTHR31642//PTHR31642:SF40 - FAMILY NOT NAMED // DUAL TRANSCRIPTION UNIT AND ALTERNATIVE SPLICING PROTEIN GLAUCE Genomic Order:  1119
Name:  ? Carub.0002s1119 Secondary Identifier:  ? PAC:39243378
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7120 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s1119 0.5kb upstream 0.5kb upstream 3541 true scaffold_2: 7169678-7173218 Capsella rubella
Carub.0002s1119 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 7169678-7170177 Capsella rubella
Carub.0002s1119 0.5kb downstream 0.5kb downstream 3541 true scaffold_2: 7170178-7173718 Capsella rubella
Carub.0002s1119 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 7173219-7173718 Capsella rubella
Carub.0002s1119 1.0kb upstream 1.0kb upstream 4041 true scaffold_2: 7169178-7173218 Capsella rubella
Carub.0002s1119 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 7169178-7170177 Capsella rubella
Carub.0002s1119 1.0kb downstream 1.0kb downstream 4041 true scaffold_2: 7170178-7174218 Capsella rubella
Carub.0002s1119 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 7173219-7174218 Capsella rubella
Carub.0002s1119 2.0kb upstream 2.0kb upstream 5041 true scaffold_2: 7168178-7173218 Capsella rubella
Carub.0002s1119 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 7168178-7170177 Capsella rubella
Carub.0002s1119 2.0kb downstream 2.0kb downstream 5041 true scaffold_2: 7170178-7175218 Capsella rubella
Carub.0002s1119 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 7173219-7175218 Capsella rubella
Carub.0002s1119 5.0kb upstream 5.0kb upstream 8041 true scaffold_2: 7165178-7173218 Capsella rubella
Carub.0002s1119 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 7165178-7170177 Capsella rubella
Carub.0002s1119 5.0kb downstream 5.0kb downstream 8041 true scaffold_2: 7170178-7178218 Capsella rubella
Carub.0002s1119 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 7173219-7178218 Capsella rubella
Carub.0002s1119 10.0kb upstream 10.0kb upstream 13041 true scaffold_2: 7160178-7173218 Capsella rubella
Carub.0002s1119 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 7160178-7170177 Capsella rubella
Carub.0002s1119 10.0kb downstream 10.0kb downstream 13041 true scaffold_2: 7170178-7183218 Capsella rubella
Carub.0002s1119 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 7173219-7183218 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369907 5261 Brassicaceae View MSA
123827879 5264 Brassicales-Malvales View MSA
124345687 5266 SBM View MSA
124243245 5268 Malvidae View MSA
124063642 5270 Rosid View MSA
123753544 5271 Pentapetalae View MSA
122797119 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain