Gene : Carub.0002s0889 C. rubella v1.1
Defline:  (1 of 1) PTHR13268//PTHR13268:SF0 - BREAST CARCINOMA AMPLIFIED SEQUENCE 3 // BREAST CARCINOMA-AMPLIFIED SEQUENCE 3 Genomic Order:  889
Name:  ? Carub.0002s0889 Secondary Identifier:  ? PAC:39244512
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s0889 0.5kb upstream 0.5kb upstream 5318 true scaffold_2: 4364295-4369612 Capsella rubella
Carub.0002s0889 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 4364295-4364794 Capsella rubella
Carub.0002s0889 0.5kb downstream 0.5kb downstream 5318 true scaffold_2: 4364795-4370112 Capsella rubella
Carub.0002s0889 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 4369613-4370112 Capsella rubella
Carub.0002s0889 1.0kb upstream 1.0kb upstream 5818 true scaffold_2: 4363795-4369612 Capsella rubella
Carub.0002s0889 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 4363795-4364794 Capsella rubella
Carub.0002s0889 1.0kb downstream 1.0kb downstream 5818 true scaffold_2: 4364795-4370612 Capsella rubella
Carub.0002s0889 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 4369613-4370612 Capsella rubella
Carub.0002s0889 2.0kb upstream 2.0kb upstream 6818 true scaffold_2: 4362795-4369612 Capsella rubella
Carub.0002s0889 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 4362795-4364794 Capsella rubella
Carub.0002s0889 2.0kb downstream 2.0kb downstream 6818 true scaffold_2: 4364795-4371612 Capsella rubella
Carub.0002s0889 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 4369613-4371612 Capsella rubella
Carub.0002s0889 5.0kb upstream 5.0kb upstream 9818 true scaffold_2: 4359795-4369612 Capsella rubella
Carub.0002s0889 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 4359795-4364794 Capsella rubella
Carub.0002s0889 5.0kb downstream 5.0kb downstream 9818 true scaffold_2: 4364795-4374612 Capsella rubella
Carub.0002s0889 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 4369613-4374612 Capsella rubella
Carub.0002s0889 10.0kb upstream 10.0kb upstream 14818 true scaffold_2: 4354795-4369612 Capsella rubella
Carub.0002s0889 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 4354795-4364794 Capsella rubella
Carub.0002s0889 10.0kb downstream 10.0kb downstream 14818 true scaffold_2: 4364795-4379612 Capsella rubella
Carub.0002s0889 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 4369613-4379612 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364473 5261 Brassicaceae View MSA
123840872 5264 Brassicales-Malvales View MSA
124348014 5266 SBM View MSA
124245951 5268 Malvidae View MSA
124063703 5270 Rosid View MSA
123744735 5271 Pentapetalae View MSA
122790134 5272 Eudicot View MSA
122047922 5273 Angiosperm View MSA
121350059 5274 Embryophyte View MSA
123424091 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain