Gene : Carub.0006s1370 C. rubella v1.1
Defline:  (1 of 1) PTHR23151//PTHR23151:SF70 - DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1370
Name:  ? Carub.0006s1370 Secondary Identifier:  ? PAC:39248168
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY0-1264 Capsella rubella pathologic  
Crubella PWY-4381 Capsella rubella pathologic  
Crubella PWY-5156 Capsella rubella pathologic  
Crubella PWY-7388 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1370 0.5kb upstream 0.5kb upstream 2486 true scaffold_6: 5089786-5092271 Capsella rubella
Carub.0006s1370 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 5089786-5090285 Capsella rubella
Carub.0006s1370 0.5kb downstream 0.5kb downstream 2486 true scaffold_6: 5090286-5092771 Capsella rubella
Carub.0006s1370 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 5092272-5092771 Capsella rubella
Carub.0006s1370 1.0kb upstream 1.0kb upstream 2986 true scaffold_6: 5089286-5092271 Capsella rubella
Carub.0006s1370 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 5089286-5090285 Capsella rubella
Carub.0006s1370 1.0kb downstream 1.0kb downstream 2986 true scaffold_6: 5090286-5093271 Capsella rubella
Carub.0006s1370 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 5092272-5093271 Capsella rubella
Carub.0006s1370 2.0kb upstream 2.0kb upstream 3986 true scaffold_6: 5088286-5092271 Capsella rubella
Carub.0006s1370 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 5088286-5090285 Capsella rubella
Carub.0006s1370 2.0kb downstream 2.0kb downstream 3986 true scaffold_6: 5090286-5094271 Capsella rubella
Carub.0006s1370 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 5092272-5094271 Capsella rubella
Carub.0006s1370 5.0kb upstream 5.0kb upstream 6986 true scaffold_6: 5085286-5092271 Capsella rubella
Carub.0006s1370 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 5085286-5090285 Capsella rubella
Carub.0006s1370 5.0kb downstream 5.0kb downstream 6986 true scaffold_6: 5090286-5097271 Capsella rubella
Carub.0006s1370 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 5092272-5097271 Capsella rubella
Carub.0006s1370 10.0kb upstream 10.0kb upstream 11986 true scaffold_6: 5080286-5092271 Capsella rubella
Carub.0006s1370 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 5080286-5090285 Capsella rubella
Carub.0006s1370 10.0kb downstream 10.0kb downstream 11986 true scaffold_6: 5090286-5102271 Capsella rubella
Carub.0006s1370 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 5092272-5102271 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374831 5261 Brassicaceae View MSA
123836808 5264 Brassicales-Malvales View MSA
124350225 5266 SBM View MSA
124244588 5268 Malvidae View MSA
124069770 5270 Rosid View MSA
123741689 5271 Pentapetalae View MSA
122795242 5272 Eudicot View MSA
122043144 5273 Angiosperm View MSA
121346326 5274 Embryophyte View MSA
123424113 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain