Gene : Carub.0007s1861 C. rubella v1.1
Defline:  (1 of 1) PTHR11735//PTHR11735:SF14 - O-SIALOGLYCOPROTEIN ENDOPEPTIDASE // TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE-RELATED Genomic Order:  1861
Name:  ? Carub.0007s1861 Secondary Identifier:  ? PAC:39234512
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY0-1587 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1861 0.5kb upstream 0.5kb upstream 2332 true scaffold_7: 6993187-6995518 Capsella rubella
Carub.0007s1861 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 6995019-6995518 Capsella rubella
Carub.0007s1861 0.5kb downstream 0.5kb downstream 2332 true scaffold_7: 6992687-6995018 Capsella rubella
Carub.0007s1861 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 6992687-6993186 Capsella rubella
Carub.0007s1861 1.0kb upstream 1.0kb upstream 2832 true scaffold_7: 6993187-6996018 Capsella rubella
Carub.0007s1861 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 6995019-6996018 Capsella rubella
Carub.0007s1861 1.0kb downstream 1.0kb downstream 2832 true scaffold_7: 6992187-6995018 Capsella rubella
Carub.0007s1861 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 6992187-6993186 Capsella rubella
Carub.0007s1861 2.0kb upstream 2.0kb upstream 3832 true scaffold_7: 6993187-6997018 Capsella rubella
Carub.0007s1861 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 6995019-6997018 Capsella rubella
Carub.0007s1861 2.0kb downstream 2.0kb downstream 3832 true scaffold_7: 6991187-6995018 Capsella rubella
Carub.0007s1861 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 6991187-6993186 Capsella rubella
Carub.0007s1861 5.0kb upstream 5.0kb upstream 6832 true scaffold_7: 6993187-7000018 Capsella rubella
Carub.0007s1861 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 6995019-7000018 Capsella rubella
Carub.0007s1861 5.0kb downstream 5.0kb downstream 6832 true scaffold_7: 6988187-6995018 Capsella rubella
Carub.0007s1861 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 6988187-6993186 Capsella rubella
Carub.0007s1861 10.0kb upstream 10.0kb upstream 11832 true scaffold_7: 6993187-7005018 Capsella rubella
Carub.0007s1861 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 6995019-7005018 Capsella rubella
Carub.0007s1861 10.0kb downstream 10.0kb downstream 11832 true scaffold_7: 6983187-6995018 Capsella rubella
Carub.0007s1861 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 6983187-6993186 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370127 5261 Brassicaceae View MSA
123829885 5264 Brassicales-Malvales View MSA
124350646 5266 SBM View MSA
124246525 5268 Malvidae View MSA
124066071 5270 Rosid View MSA
123747951 5271 Pentapetalae View MSA
122791458 5272 Eudicot View MSA
122043416 5273 Angiosperm View MSA
121345797 5274 Embryophyte View MSA
123425080 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain