Gene : Carub.0007s1593 C. rubella v1.1
Defline:  (1 of 2) PTHR11404//PTHR11404:SF24 - SUPEROXIDE DISMUTASE 2 // SUPEROXIDE DISMUTASE [FE] 2, CHLOROPLASTIC Genomic Order:  1593
Name:  ? Carub.0007s1593 Secondary Identifier:  ? PAC:39235789
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella DETOX1-PWY Capsella rubella pathologic  
Crubella DETOX1-PWY-1 Capsella rubella pathologic  
Crubella PWY-6854 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1593 0.5kb upstream 0.5kb upstream 2370 true scaffold_7: 5923098-5925467 Capsella rubella
Carub.0007s1593 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 5923098-5923597 Capsella rubella
Carub.0007s1593 0.5kb downstream 0.5kb downstream 2370 true scaffold_7: 5923598-5925967 Capsella rubella
Carub.0007s1593 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 5925468-5925967 Capsella rubella
Carub.0007s1593 1.0kb upstream 1.0kb upstream 2870 true scaffold_7: 5922598-5925467 Capsella rubella
Carub.0007s1593 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 5922598-5923597 Capsella rubella
Carub.0007s1593 1.0kb downstream 1.0kb downstream 2870 true scaffold_7: 5923598-5926467 Capsella rubella
Carub.0007s1593 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 5925468-5926467 Capsella rubella
Carub.0007s1593 2.0kb upstream 2.0kb upstream 3870 true scaffold_7: 5921598-5925467 Capsella rubella
Carub.0007s1593 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 5921598-5923597 Capsella rubella
Carub.0007s1593 2.0kb downstream 2.0kb downstream 3870 true scaffold_7: 5923598-5927467 Capsella rubella
Carub.0007s1593 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 5925468-5927467 Capsella rubella
Carub.0007s1593 5.0kb upstream 5.0kb upstream 6870 true scaffold_7: 5918598-5925467 Capsella rubella
Carub.0007s1593 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 5918598-5923597 Capsella rubella
Carub.0007s1593 5.0kb downstream 5.0kb downstream 6870 true scaffold_7: 5923598-5930467 Capsella rubella
Carub.0007s1593 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 5925468-5930467 Capsella rubella
Carub.0007s1593 10.0kb upstream 10.0kb upstream 11870 true scaffold_7: 5913598-5925467 Capsella rubella
Carub.0007s1593 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 5913598-5923597 Capsella rubella
Carub.0007s1593 10.0kb downstream 10.0kb downstream 11870 true scaffold_7: 5923598-5935467 Capsella rubella
Carub.0007s1593 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 5925468-5935467 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370198 5261 Brassicaceae View MSA
123799915 5264 Brassicales-Malvales View MSA
124297385 5266 SBM View MSA
124149294 5268 Malvidae View MSA
124072391 5270 Rosid View MSA
123741409 5271 Pentapetalae View MSA
122787652 5272 Eudicot View MSA
122047747 5273 Angiosperm View MSA
121351401 5274 Embryophyte View MSA
123425969 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain