Gene : Carub.0007s1709 C. rubella v1.1
Defline:  (1 of 2) PTHR13301//PTHR13301:SF51 - X-BOX TRANSCRIPTION FACTOR-RELATED // CELLULOSE SYNTHASE-LIKE PROTEIN G1-RELATED Genomic Order:  1709
Name:  ? Carub.0007s1709 Secondary Identifier:  ? PAC:39232215
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1001 Capsella rubella pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1709 0.5kb upstream 0.5kb upstream 3219 true scaffold_7: 6375366-6378584 Capsella rubella
Carub.0007s1709 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 6378085-6378584 Capsella rubella
Carub.0007s1709 0.5kb downstream 0.5kb downstream 3219 true scaffold_7: 6374866-6378084 Capsella rubella
Carub.0007s1709 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 6374866-6375365 Capsella rubella
Carub.0007s1709 1.0kb upstream 1.0kb upstream 3719 true scaffold_7: 6375366-6379084 Capsella rubella
Carub.0007s1709 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 6378085-6379084 Capsella rubella
Carub.0007s1709 1.0kb downstream 1.0kb downstream 3719 true scaffold_7: 6374366-6378084 Capsella rubella
Carub.0007s1709 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 6374366-6375365 Capsella rubella
Carub.0007s1709 2.0kb upstream 2.0kb upstream 4719 true scaffold_7: 6375366-6380084 Capsella rubella
Carub.0007s1709 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 6378085-6380084 Capsella rubella
Carub.0007s1709 2.0kb downstream 2.0kb downstream 4719 true scaffold_7: 6373366-6378084 Capsella rubella
Carub.0007s1709 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 6373366-6375365 Capsella rubella
Carub.0007s1709 5.0kb upstream 5.0kb upstream 7719 true scaffold_7: 6375366-6383084 Capsella rubella
Carub.0007s1709 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 6378085-6383084 Capsella rubella
Carub.0007s1709 5.0kb downstream 5.0kb downstream 7719 true scaffold_7: 6370366-6378084 Capsella rubella
Carub.0007s1709 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 6370366-6375365 Capsella rubella
Carub.0007s1709 10.0kb upstream 10.0kb upstream 12719 true scaffold_7: 6375366-6388084 Capsella rubella
Carub.0007s1709 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 6378085-6388084 Capsella rubella
Carub.0007s1709 10.0kb downstream 10.0kb downstream 12719 true scaffold_7: 6365366-6378084 Capsella rubella
Carub.0007s1709 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 6365366-6375365 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372317 5261 Brassicaceae View MSA
123800334 5264 Brassicales-Malvales View MSA
124297755 5266 SBM View MSA
124251298 5268 Malvidae View MSA
124070260 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain