Gene : Carub.0007s1710 C. rubella v1.1
Defline:  (1 of 2) PTHR13301//PTHR13301:SF51 - X-BOX TRANSCRIPTION FACTOR-RELATED // CELLULOSE SYNTHASE-LIKE PROTEIN G1-RELATED Genomic Order:  1710
Name:  ? Carub.0007s1710 Secondary Identifier:  ? PAC:39235774
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1001 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1710 0.5kb upstream 0.5kb upstream 3870 true scaffold_7: 6379858-6383727 Capsella rubella
Carub.0007s1710 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 6383228-6383727 Capsella rubella
Carub.0007s1710 0.5kb downstream 0.5kb downstream 3870 true scaffold_7: 6379358-6383227 Capsella rubella
Carub.0007s1710 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 6379358-6379857 Capsella rubella
Carub.0007s1710 1.0kb upstream 1.0kb upstream 4370 true scaffold_7: 6379858-6384227 Capsella rubella
Carub.0007s1710 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 6383228-6384227 Capsella rubella
Carub.0007s1710 1.0kb downstream 1.0kb downstream 4370 true scaffold_7: 6378858-6383227 Capsella rubella
Carub.0007s1710 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 6378858-6379857 Capsella rubella
Carub.0007s1710 2.0kb upstream 2.0kb upstream 5370 true scaffold_7: 6379858-6385227 Capsella rubella
Carub.0007s1710 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 6383228-6385227 Capsella rubella
Carub.0007s1710 2.0kb downstream 2.0kb downstream 5370 true scaffold_7: 6377858-6383227 Capsella rubella
Carub.0007s1710 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 6377858-6379857 Capsella rubella
Carub.0007s1710 5.0kb upstream 5.0kb upstream 8370 true scaffold_7: 6379858-6388227 Capsella rubella
Carub.0007s1710 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 6383228-6388227 Capsella rubella
Carub.0007s1710 5.0kb downstream 5.0kb downstream 8370 true scaffold_7: 6374858-6383227 Capsella rubella
Carub.0007s1710 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 6374858-6379857 Capsella rubella
Carub.0007s1710 10.0kb upstream 10.0kb upstream 13370 true scaffold_7: 6379858-6393227 Capsella rubella
Carub.0007s1710 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 6383228-6393227 Capsella rubella
Carub.0007s1710 10.0kb downstream 10.0kb downstream 13370 true scaffold_7: 6369858-6383227 Capsella rubella
Carub.0007s1710 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 6369858-6379857 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377822 5261 Brassicaceae View MSA
123840606 5264 Brassicales-Malvales View MSA
124346924 5266 SBM View MSA
124240954 5268 Malvidae View MSA
124070260 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain