Gene : Carub.0007s1525 C. rubella v1.1
Defline:  (1 of 2) 1.14.13.129 - Beta-carotene 3-hydroxylase / Beta-carotene 3,3'-monooxygenase Genomic Order:  1525
Name:  ? Carub.0007s1525 Secondary Identifier:  ? PAC:39234841
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella CAROTENOID-PWY Capsella rubella pathologic  
Crubella PWY-5944 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1525 0.5kb upstream 0.5kb upstream 2681 true scaffold_7: 5684213-5686893 Capsella rubella
Carub.0007s1525 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 5684213-5684712 Capsella rubella
Carub.0007s1525 0.5kb downstream 0.5kb downstream 2681 true scaffold_7: 5684713-5687393 Capsella rubella
Carub.0007s1525 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 5686894-5687393 Capsella rubella
Carub.0007s1525 1.0kb upstream 1.0kb upstream 3181 true scaffold_7: 5683713-5686893 Capsella rubella
Carub.0007s1525 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 5683713-5684712 Capsella rubella
Carub.0007s1525 1.0kb downstream 1.0kb downstream 3181 true scaffold_7: 5684713-5687893 Capsella rubella
Carub.0007s1525 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 5686894-5687893 Capsella rubella
Carub.0007s1525 2.0kb upstream 2.0kb upstream 4181 true scaffold_7: 5682713-5686893 Capsella rubella
Carub.0007s1525 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 5682713-5684712 Capsella rubella
Carub.0007s1525 2.0kb downstream 2.0kb downstream 4181 true scaffold_7: 5684713-5688893 Capsella rubella
Carub.0007s1525 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 5686894-5688893 Capsella rubella
Carub.0007s1525 5.0kb upstream 5.0kb upstream 7181 true scaffold_7: 5679713-5686893 Capsella rubella
Carub.0007s1525 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 5679713-5684712 Capsella rubella
Carub.0007s1525 5.0kb downstream 5.0kb downstream 7181 true scaffold_7: 5684713-5691893 Capsella rubella
Carub.0007s1525 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 5686894-5691893 Capsella rubella
Carub.0007s1525 10.0kb upstream 10.0kb upstream 12181 true scaffold_7: 5674713-5686893 Capsella rubella
Carub.0007s1525 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 5674713-5684712 Capsella rubella
Carub.0007s1525 10.0kb downstream 10.0kb downstream 12181 true scaffold_7: 5684713-5696893 Capsella rubella
Carub.0007s1525 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 5686894-5696893 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363047 5261 Brassicaceae View MSA
123837541 5264 Brassicales-Malvales View MSA
124338230 5266 SBM View MSA
124251518 5268 Malvidae View MSA
124066838 5270 Rosid View MSA
123749049 5271 Pentapetalae View MSA
122787521 5272 Eudicot View MSA
122046641 5273 Angiosperm View MSA
123429104 5275 Viridiplantae View MSA
121351007 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain