Gene : Carub.0007s1138 C. rubella v1.1
Defline:  (1 of 7) K00850 - 6-phosphofructokinase 1 (pfkA, PFK) Genomic Order:  1138
Name:  ? Carub.0007s1138 Secondary Identifier:  ? PAC:39235837
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ANAEROFRUCAT-PWY Capsella rubella pathologic  
Crubella ANAGLYCOLYSIS-PWY Capsella rubella pathologic  
Crubella PWY-1042 Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1138 0.5kb upstream 0.5kb upstream 4346 true scaffold_7: 4334951-4339296 Capsella rubella
Carub.0007s1138 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 4334951-4335450 Capsella rubella
Carub.0007s1138 0.5kb downstream 0.5kb downstream 4346 true scaffold_7: 4335451-4339796 Capsella rubella
Carub.0007s1138 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 4339297-4339796 Capsella rubella
Carub.0007s1138 1.0kb upstream 1.0kb upstream 4846 true scaffold_7: 4334451-4339296 Capsella rubella
Carub.0007s1138 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 4334451-4335450 Capsella rubella
Carub.0007s1138 1.0kb downstream 1.0kb downstream 4846 true scaffold_7: 4335451-4340296 Capsella rubella
Carub.0007s1138 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 4339297-4340296 Capsella rubella
Carub.0007s1138 2.0kb upstream 2.0kb upstream 5846 true scaffold_7: 4333451-4339296 Capsella rubella
Carub.0007s1138 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 4333451-4335450 Capsella rubella
Carub.0007s1138 2.0kb downstream 2.0kb downstream 5846 true scaffold_7: 4335451-4341296 Capsella rubella
Carub.0007s1138 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 4339297-4341296 Capsella rubella
Carub.0007s1138 5.0kb upstream 5.0kb upstream 8846 true scaffold_7: 4330451-4339296 Capsella rubella
Carub.0007s1138 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 4330451-4335450 Capsella rubella
Carub.0007s1138 5.0kb downstream 5.0kb downstream 8846 true scaffold_7: 4335451-4344296 Capsella rubella
Carub.0007s1138 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 4339297-4344296 Capsella rubella
Carub.0007s1138 10.0kb upstream 10.0kb upstream 13846 true scaffold_7: 4325451-4339296 Capsella rubella
Carub.0007s1138 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 4325451-4335450 Capsella rubella
Carub.0007s1138 10.0kb downstream 10.0kb downstream 13846 true scaffold_7: 4335451-4349296 Capsella rubella
Carub.0007s1138 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 4339297-4349296 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041124 5273 Angiosperm View MSA
122363993 5261 Brassicaceae View MSA
123798663 5264 Brassicales-Malvales View MSA
124296271 5266 SBM View MSA
124148474 5268 Malvidae View MSA
124069245 5270 Rosid View MSA
123747020 5271 Pentapetalae View MSA
122788773 5272 Eudicot View MSA
121349898 5274 Embryophyte View MSA
123428795 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain