Gene : Carub.0007s1163 C. rubella v1.1
Defline:  (1 of 1) 1.1.1.35//4.2.1.17//5.1.2.3//5.3.3.8 - 3-hydroxyacyl-CoA dehydrogenase / Beta-keto-reductase // Enoyl-CoA hydratase / Unsaturated acyl-CoA hydratase // 3-hydroxybutyryl-CoA epimerase // Dodecenoyl-CoA isomerase / Dodecenoyl-CoA Delta-isomerase Genomic Order:  1163
Name:  ? Carub.0007s1163 Secondary Identifier:  ? PAC:39232636
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Sequence Feature Displayer

Ontology Annotation Displayer

11 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ILEUDEG-PWY Capsella rubella pathologic  
Crubella PWY-5136 Capsella rubella pathologic  
Crubella PWY-5137 Capsella rubella pathologic  
Crubella PWY-5138 Capsella rubella pathologic  
Crubella PWY-561 Capsella rubella pathologic  
Crubella PWY-6435 Capsella rubella pathologic  
Crubella PWY-6837 Capsella rubella pathologic  
Crubella PWY-7036 Capsella rubella pathologic  
Crubella PWY-735 Capsella rubella pathologic  
Crubella PWY-7606 Capsella rubella pathologic  
Crubella VALDEG-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1163 0.5kb upstream 0.5kb upstream 5540 true scaffold_7: 4439387-4444926 Capsella rubella
Carub.0007s1163 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 4439387-4439886 Capsella rubella
Carub.0007s1163 0.5kb downstream 0.5kb downstream 5540 true scaffold_7: 4439887-4445426 Capsella rubella
Carub.0007s1163 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 4444927-4445426 Capsella rubella
Carub.0007s1163 1.0kb upstream 1.0kb upstream 6040 true scaffold_7: 4438887-4444926 Capsella rubella
Carub.0007s1163 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 4438887-4439886 Capsella rubella
Carub.0007s1163 1.0kb downstream 1.0kb downstream 6040 true scaffold_7: 4439887-4445926 Capsella rubella
Carub.0007s1163 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 4444927-4445926 Capsella rubella
Carub.0007s1163 2.0kb upstream 2.0kb upstream 7040 true scaffold_7: 4437887-4444926 Capsella rubella
Carub.0007s1163 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 4437887-4439886 Capsella rubella
Carub.0007s1163 2.0kb downstream 2.0kb downstream 7040 true scaffold_7: 4439887-4446926 Capsella rubella
Carub.0007s1163 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 4444927-4446926 Capsella rubella
Carub.0007s1163 5.0kb upstream 5.0kb upstream 10040 true scaffold_7: 4434887-4444926 Capsella rubella
Carub.0007s1163 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 4434887-4439886 Capsella rubella
Carub.0007s1163 5.0kb downstream 5.0kb downstream 10040 true scaffold_7: 4439887-4449926 Capsella rubella
Carub.0007s1163 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 4444927-4449926 Capsella rubella
Carub.0007s1163 10.0kb upstream 10.0kb upstream 15040 true scaffold_7: 4429887-4444926 Capsella rubella
Carub.0007s1163 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 4429887-4439886 Capsella rubella
Carub.0007s1163 10.0kb downstream 10.0kb downstream 15040 true scaffold_7: 4439887-4454926 Capsella rubella
Carub.0007s1163 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 4444927-4454926 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375346 5261 Brassicaceae View MSA
123827645 5264 Brassicales-Malvales View MSA
124340357 5266 SBM View MSA
124241390 5268 Malvidae View MSA
124067540 5270 Rosid View MSA
123736586 5271 Pentapetalae View MSA
122787212 5272 Eudicot View MSA
122047578 5273 Angiosperm View MSA
121310763 5274 Embryophyte View MSA
123348170 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain