Gene : Carub.0006s1415 C. rubella v1.1
Defline:  (1 of 2) 4.1.1.18//4.1.1.50 - Lysine decarboxylase / L-lysine carboxy-lyase // Adenosylmethionine decarboxylase / S-adenosyl-L-methionine decarboxylase Genomic Order:  1415
Name:  ? Carub.0006s1415 Secondary Identifier:  ? PAC:39247731
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ARGSPECAT-PWY Capsella rubella pathologic  
Crubella BSUBPOLYAMSYN-PWY Capsella rubella pathologic  
Crubella PWY-7528 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1415 0.5kb upstream 0.5kb upstream 1775 true scaffold_6: 5248774-5250548 Capsella rubella
Carub.0006s1415 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 5248774-5249273 Capsella rubella
Carub.0006s1415 0.5kb downstream 0.5kb downstream 1775 true scaffold_6: 5249274-5251048 Capsella rubella
Carub.0006s1415 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 5250549-5251048 Capsella rubella
Carub.0006s1415 1.0kb upstream 1.0kb upstream 2275 true scaffold_6: 5248274-5250548 Capsella rubella
Carub.0006s1415 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 5248274-5249273 Capsella rubella
Carub.0006s1415 1.0kb downstream 1.0kb downstream 2275 true scaffold_6: 5249274-5251548 Capsella rubella
Carub.0006s1415 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 5250549-5251548 Capsella rubella
Carub.0006s1415 2.0kb upstream 2.0kb upstream 3275 true scaffold_6: 5247274-5250548 Capsella rubella
Carub.0006s1415 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 5247274-5249273 Capsella rubella
Carub.0006s1415 2.0kb downstream 2.0kb downstream 3275 true scaffold_6: 5249274-5252548 Capsella rubella
Carub.0006s1415 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 5250549-5252548 Capsella rubella
Carub.0006s1415 5.0kb upstream 5.0kb upstream 6275 true scaffold_6: 5244274-5250548 Capsella rubella
Carub.0006s1415 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 5244274-5249273 Capsella rubella
Carub.0006s1415 5.0kb downstream 5.0kb downstream 6275 true scaffold_6: 5249274-5255548 Capsella rubella
Carub.0006s1415 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 5250549-5255548 Capsella rubella
Carub.0006s1415 10.0kb upstream 10.0kb upstream 11275 true scaffold_6: 5239274-5250548 Capsella rubella
Carub.0006s1415 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 5239274-5249273 Capsella rubella
Carub.0006s1415 10.0kb downstream 10.0kb downstream 11275 true scaffold_6: 5249274-5260548 Capsella rubella
Carub.0006s1415 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 5250549-5260548 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369621 5261 Brassicaceae View MSA
123841428 5264 Brassicales-Malvales View MSA
124346938 5266 SBM View MSA
124250445 5268 Malvidae View MSA
124073000 5270 Rosid View MSA
123746333 5271 Pentapetalae View MSA
122785858 5272 Eudicot View MSA
122049143 5273 Angiosperm View MSA
121348944 5274 Embryophyte View MSA
123423800 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain