Gene : Carub.0006s1414 C. rubella v1.1
Defline:  (1 of 3) PTHR35727//PTHR35727:SF1 - FAMILY NOT NAMED // CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 10-RELATED Genomic Order:  1414
Name:  ? Carub.0006s1414 Secondary Identifier:  ? PAC:39247772
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1414 0.5kb upstream 0.5kb upstream 656 true scaffold_6: 5248560-5249215 Capsella rubella
Carub.0006s1414 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 5248560-5249059 Capsella rubella
Carub.0006s1414 0.5kb downstream 0.5kb downstream 656 true scaffold_6: 5249060-5249715 Capsella rubella
Carub.0006s1414 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 5249216-5249715 Capsella rubella
Carub.0006s1414 1.0kb upstream 1.0kb upstream 1156 true scaffold_6: 5248060-5249215 Capsella rubella
Carub.0006s1414 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 5248060-5249059 Capsella rubella
Carub.0006s1414 1.0kb downstream 1.0kb downstream 1156 true scaffold_6: 5249060-5250215 Capsella rubella
Carub.0006s1414 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 5249216-5250215 Capsella rubella
Carub.0006s1414 2.0kb upstream 2.0kb upstream 2156 true scaffold_6: 5247060-5249215 Capsella rubella
Carub.0006s1414 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 5247060-5249059 Capsella rubella
Carub.0006s1414 2.0kb downstream 2.0kb downstream 2156 true scaffold_6: 5249060-5251215 Capsella rubella
Carub.0006s1414 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 5249216-5251215 Capsella rubella
Carub.0006s1414 5.0kb upstream 5.0kb upstream 5156 true scaffold_6: 5244060-5249215 Capsella rubella
Carub.0006s1414 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 5244060-5249059 Capsella rubella
Carub.0006s1414 5.0kb downstream 5.0kb downstream 5156 true scaffold_6: 5249060-5254215 Capsella rubella
Carub.0006s1414 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 5249216-5254215 Capsella rubella
Carub.0006s1414 10.0kb upstream 10.0kb upstream 10156 true scaffold_6: 5239060-5249215 Capsella rubella
Carub.0006s1414 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 5239060-5249059 Capsella rubella
Carub.0006s1414 10.0kb downstream 10.0kb downstream 10156 true scaffold_6: 5249060-5259215 Capsella rubella
Carub.0006s1414 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 5249216-5259215 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380209 5261 Brassicaceae View MSA
123837481 5264 Brassicales-Malvales View MSA
124350039 5266 SBM View MSA
124252061 5268 Malvidae View MSA
124069514 5270 Rosid View MSA
123743375 5271 Pentapetalae View MSA
122770636 5272 Eudicot View MSA
122049169 5273 Angiosperm View MSA
121348872 5274 Embryophyte View MSA
123381051 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain