Gene : Carub.0007s1010 C. rubella v1.1
Defline:  (1 of 2) PTHR12169:SF6 - LACTATION ELEVATED PROTEIN 1 Genomic Order:  1010
Name:  ? Carub.0007s1010 Secondary Identifier:  ? PAC:39233857
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ANAEROFRUCAT-PWY Capsella rubella pathologic  
Crubella ANAGLYCOLYSIS-PWY Capsella rubella pathologic  
Crubella GLUCOSE1PMETAB-PWY Capsella rubella pathologic  
Crubella PWY-621 Capsella rubella pathologic  
Crubella PWY-7238 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1010 0.5kb upstream 0.5kb upstream 4108 true scaffold_7: 3820811-3824918 Capsella rubella
Carub.0007s1010 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 3820811-3821310 Capsella rubella
Carub.0007s1010 0.5kb downstream 0.5kb downstream 4108 true scaffold_7: 3821311-3825418 Capsella rubella
Carub.0007s1010 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 3824919-3825418 Capsella rubella
Carub.0007s1010 1.0kb upstream 1.0kb upstream 4608 true scaffold_7: 3820311-3824918 Capsella rubella
Carub.0007s1010 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 3820311-3821310 Capsella rubella
Carub.0007s1010 1.0kb downstream 1.0kb downstream 4608 true scaffold_7: 3821311-3825918 Capsella rubella
Carub.0007s1010 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 3824919-3825918 Capsella rubella
Carub.0007s1010 2.0kb upstream 2.0kb upstream 5608 true scaffold_7: 3819311-3824918 Capsella rubella
Carub.0007s1010 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 3819311-3821310 Capsella rubella
Carub.0007s1010 2.0kb downstream 2.0kb downstream 5608 true scaffold_7: 3821311-3826918 Capsella rubella
Carub.0007s1010 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 3824919-3826918 Capsella rubella
Carub.0007s1010 5.0kb upstream 5.0kb upstream 8608 true scaffold_7: 3816311-3824918 Capsella rubella
Carub.0007s1010 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 3816311-3821310 Capsella rubella
Carub.0007s1010 5.0kb downstream 5.0kb downstream 8608 true scaffold_7: 3821311-3829918 Capsella rubella
Carub.0007s1010 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 3824919-3829918 Capsella rubella
Carub.0007s1010 10.0kb upstream 10.0kb upstream 13608 true scaffold_7: 3811311-3824918 Capsella rubella
Carub.0007s1010 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 3811311-3821310 Capsella rubella
Carub.0007s1010 10.0kb downstream 10.0kb downstream 13608 true scaffold_7: 3821311-3834918 Capsella rubella
Carub.0007s1010 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 3824919-3834918 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370199 5261 Brassicaceae View MSA
123830240 5264 Brassicales-Malvales View MSA
124346939 5266 SBM View MSA
124240736 5268 Malvidae View MSA
124061792 5270 Rosid View MSA
123752091 5271 Pentapetalae View MSA
122793026 5272 Eudicot View MSA
122047660 5273 Angiosperm View MSA
121344773 5274 Embryophyte View MSA
123427307 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain