Gene : Carub.0007s1470 C. rubella v1.1
Defline:  (1 of 2) PTHR11183:SF33 - GALACTINOL SYNTHASE 1-RELATED Genomic Order:  1470
Name:  ? Carub.0007s1470 Secondary Identifier:  ? PAC:39233532
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5337 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1470 0.5kb upstream 0.5kb upstream 1804 true scaffold_7: 5486649-5488452 Capsella rubella
Carub.0007s1470 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 5487953-5488452 Capsella rubella
Carub.0007s1470 0.5kb downstream 0.5kb downstream 1804 true scaffold_7: 5486149-5487952 Capsella rubella
Carub.0007s1470 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 5486149-5486648 Capsella rubella
Carub.0007s1470 1.0kb upstream 1.0kb upstream 2304 true scaffold_7: 5486649-5488952 Capsella rubella
Carub.0007s1470 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 5487953-5488952 Capsella rubella
Carub.0007s1470 1.0kb downstream 1.0kb downstream 2304 true scaffold_7: 5485649-5487952 Capsella rubella
Carub.0007s1470 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 5485649-5486648 Capsella rubella
Carub.0007s1470 2.0kb upstream 2.0kb upstream 3304 true scaffold_7: 5486649-5489952 Capsella rubella
Carub.0007s1470 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 5487953-5489952 Capsella rubella
Carub.0007s1470 2.0kb downstream 2.0kb downstream 3304 true scaffold_7: 5484649-5487952 Capsella rubella
Carub.0007s1470 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 5484649-5486648 Capsella rubella
Carub.0007s1470 5.0kb upstream 5.0kb upstream 6304 true scaffold_7: 5486649-5492952 Capsella rubella
Carub.0007s1470 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 5487953-5492952 Capsella rubella
Carub.0007s1470 5.0kb downstream 5.0kb downstream 6304 true scaffold_7: 5481649-5487952 Capsella rubella
Carub.0007s1470 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 5481649-5486648 Capsella rubella
Carub.0007s1470 10.0kb upstream 10.0kb upstream 11304 true scaffold_7: 5486649-5497952 Capsella rubella
Carub.0007s1470 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 5487953-5497952 Capsella rubella
Carub.0007s1470 10.0kb downstream 10.0kb downstream 11304 true scaffold_7: 5476649-5487952 Capsella rubella
Carub.0007s1470 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 5476649-5486648 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376753 5261 Brassicaceae View MSA
123842385 5264 Brassicales-Malvales View MSA
124323451 5266 SBM View MSA
124256963 5268 Malvidae View MSA
124072040 5270 Rosid View MSA
123746069 5271 Pentapetalae View MSA
122793646 5272 Eudicot View MSA
122046900 5273 Angiosperm View MSA
121310671 5274 Embryophyte View MSA
123348097 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain