Gene : Carub.0007s1473 C. rubella v1.1
Defline:  (1 of 1) PTHR10509//PTHR10509:SF29 - O-METHYLTRANSFERASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1473
Name:  ? Carub.0007s1473 Secondary Identifier:  ? PAC:39232002
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1121 Capsella rubella pathologic  
Crubella PWY-361 Capsella rubella pathologic  
Crubella PWY-6039 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1473 0.5kb upstream 0.5kb upstream 2211 true scaffold_7: 5492165-5494375 Capsella rubella
Carub.0007s1473 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 5493876-5494375 Capsella rubella
Carub.0007s1473 0.5kb downstream 0.5kb downstream 2211 true scaffold_7: 5491665-5493875 Capsella rubella
Carub.0007s1473 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 5491665-5492164 Capsella rubella
Carub.0007s1473 1.0kb upstream 1.0kb upstream 2711 true scaffold_7: 5492165-5494875 Capsella rubella
Carub.0007s1473 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 5493876-5494875 Capsella rubella
Carub.0007s1473 1.0kb downstream 1.0kb downstream 2711 true scaffold_7: 5491165-5493875 Capsella rubella
Carub.0007s1473 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 5491165-5492164 Capsella rubella
Carub.0007s1473 2.0kb upstream 2.0kb upstream 3711 true scaffold_7: 5492165-5495875 Capsella rubella
Carub.0007s1473 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 5493876-5495875 Capsella rubella
Carub.0007s1473 2.0kb downstream 2.0kb downstream 3711 true scaffold_7: 5490165-5493875 Capsella rubella
Carub.0007s1473 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 5490165-5492164 Capsella rubella
Carub.0007s1473 5.0kb upstream 5.0kb upstream 6711 true scaffold_7: 5492165-5498875 Capsella rubella
Carub.0007s1473 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 5493876-5498875 Capsella rubella
Carub.0007s1473 5.0kb downstream 5.0kb downstream 6711 true scaffold_7: 5487165-5493875 Capsella rubella
Carub.0007s1473 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 5487165-5492164 Capsella rubella
Carub.0007s1473 10.0kb upstream 10.0kb upstream 11711 true scaffold_7: 5492165-5503875 Capsella rubella
Carub.0007s1473 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 5493876-5503875 Capsella rubella
Carub.0007s1473 10.0kb downstream 10.0kb downstream 11711 true scaffold_7: 5482165-5493875 Capsella rubella
Carub.0007s1473 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 5482165-5492164 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367701 5261 Brassicaceae View MSA
123831985 5264 Brassicales-Malvales View MSA
124339919 5266 SBM View MSA
124244563 5268 Malvidae View MSA
124070229 5270 Rosid View MSA
123751667 5271 Pentapetalae View MSA
122774127 5272 Eudicot View MSA
122050348 5273 Angiosperm View MSA
121311864 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain