Gene : Carub.0007s0816 C. rubella v1.1
Defline:  (1 of 2) PTHR13301:SF33 - CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 1 [UDP-FORMING] Genomic Order:  816
Name:  ? Carub.0007s0816 Secondary Identifier:  ? PAC:39235479
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1001 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s0816 0.5kb upstream 0.5kb upstream 6296 true scaffold_7: 3109049-3115344 Capsella rubella
Carub.0007s0816 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 3109049-3109548 Capsella rubella
Carub.0007s0816 0.5kb downstream 0.5kb downstream 6296 true scaffold_7: 3109549-3115844 Capsella rubella
Carub.0007s0816 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 3115345-3115844 Capsella rubella
Carub.0007s0816 1.0kb upstream 1.0kb upstream 6796 true scaffold_7: 3108549-3115344 Capsella rubella
Carub.0007s0816 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 3108549-3109548 Capsella rubella
Carub.0007s0816 1.0kb downstream 1.0kb downstream 6796 true scaffold_7: 3109549-3116344 Capsella rubella
Carub.0007s0816 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 3115345-3116344 Capsella rubella
Carub.0007s0816 2.0kb upstream 2.0kb upstream 7796 true scaffold_7: 3107549-3115344 Capsella rubella
Carub.0007s0816 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 3107549-3109548 Capsella rubella
Carub.0007s0816 2.0kb downstream 2.0kb downstream 7796 true scaffold_7: 3109549-3117344 Capsella rubella
Carub.0007s0816 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 3115345-3117344 Capsella rubella
Carub.0007s0816 5.0kb upstream 5.0kb upstream 10796 true scaffold_7: 3104549-3115344 Capsella rubella
Carub.0007s0816 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 3104549-3109548 Capsella rubella
Carub.0007s0816 5.0kb downstream 5.0kb downstream 10796 true scaffold_7: 3109549-3120344 Capsella rubella
Carub.0007s0816 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 3115345-3120344 Capsella rubella
Carub.0007s0816 10.0kb upstream 10.0kb upstream 15796 true scaffold_7: 3099549-3115344 Capsella rubella
Carub.0007s0816 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 3099549-3109548 Capsella rubella
Carub.0007s0816 10.0kb downstream 10.0kb downstream 15796 true scaffold_7: 3109549-3125344 Capsella rubella
Carub.0007s0816 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 3115345-3125344 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376380 5261 Brassicaceae View MSA
123827599 5264 Brassicales-Malvales View MSA
124350218 5266 SBM View MSA
124240162 5268 Malvidae View MSA
124068602 5270 Rosid View MSA
123746424 5271 Pentapetalae View MSA
122793475 5272 Eudicot View MSA
122046929 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain