Gene : Carub.0007s0856 C. rubella v1.1
Defline:  (1 of 1) K00811 - aspartate aminotransferase, chloroplastic (ASP5) Genomic Order:  856
Name:  ? Carub.0007s0856 Secondary Identifier:  ? PAC:39233326
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ASPARTATE-DEG1-PWY Capsella rubella pathologic  
Crubella ASPARTATESYN-PWY Capsella rubella pathologic  
Crubella PWY-3001 Capsella rubella pathologic  
Crubella PWY-7115 Capsella rubella pathologic  
Crubella PWY-7117 Capsella rubella pathologic  
Crubella THRESYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s0856 0.5kb upstream 0.5kb upstream 3643 true scaffold_7: 3257151-3260793 Capsella rubella
Carub.0007s0856 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 3257151-3257650 Capsella rubella
Carub.0007s0856 0.5kb downstream 0.5kb downstream 3643 true scaffold_7: 3257651-3261293 Capsella rubella
Carub.0007s0856 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 3260794-3261293 Capsella rubella
Carub.0007s0856 1.0kb upstream 1.0kb upstream 4143 true scaffold_7: 3256651-3260793 Capsella rubella
Carub.0007s0856 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 3256651-3257650 Capsella rubella
Carub.0007s0856 1.0kb downstream 1.0kb downstream 4143 true scaffold_7: 3257651-3261793 Capsella rubella
Carub.0007s0856 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 3260794-3261793 Capsella rubella
Carub.0007s0856 2.0kb upstream 2.0kb upstream 5143 true scaffold_7: 3255651-3260793 Capsella rubella
Carub.0007s0856 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 3255651-3257650 Capsella rubella
Carub.0007s0856 2.0kb downstream 2.0kb downstream 5143 true scaffold_7: 3257651-3262793 Capsella rubella
Carub.0007s0856 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 3260794-3262793 Capsella rubella
Carub.0007s0856 5.0kb upstream 5.0kb upstream 8143 true scaffold_7: 3252651-3260793 Capsella rubella
Carub.0007s0856 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 3252651-3257650 Capsella rubella
Carub.0007s0856 5.0kb downstream 5.0kb downstream 8143 true scaffold_7: 3257651-3265793 Capsella rubella
Carub.0007s0856 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 3260794-3265793 Capsella rubella
Carub.0007s0856 10.0kb upstream 10.0kb upstream 13143 true scaffold_7: 3247651-3260793 Capsella rubella
Carub.0007s0856 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 3247651-3257650 Capsella rubella
Carub.0007s0856 10.0kb downstream 10.0kb downstream 13143 true scaffold_7: 3257651-3270793 Capsella rubella
Carub.0007s0856 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 3260794-3270793 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376883 5261 Brassicaceae View MSA
123833369 5264 Brassicales-Malvales View MSA
124341327 5266 SBM View MSA
124241276 5268 Malvidae View MSA
124066749 5270 Rosid View MSA
123740507 5271 Pentapetalae View MSA
122797537 5272 Eudicot View MSA
122048100 5273 Angiosperm View MSA
121346908 5274 Embryophyte View MSA
123424622 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain