Gene : Carub.0007s1387 C. rubella v1.1
Defline:  (1 of 3) 4.2.1.3 - Aconitate hydratase / Citrate(isocitrate) hydro-lyase Genomic Order:  1387
Name:  ? Carub.0007s1387 Secondary Identifier:  ? PAC:39234319
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella GLYOXYLATE-BYPASS Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY-561 Capsella rubella pathologic  
Crubella PWY-5690 Capsella rubella pathologic  
Crubella PWY-6549 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1387 0.5kb upstream 0.5kb upstream 6339 true scaffold_7: 5234970-5241308 Capsella rubella
Carub.0007s1387 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 5240809-5241308 Capsella rubella
Carub.0007s1387 0.5kb downstream 0.5kb downstream 6339 true scaffold_7: 5234470-5240808 Capsella rubella
Carub.0007s1387 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 5234470-5234969 Capsella rubella
Carub.0007s1387 1.0kb upstream 1.0kb upstream 6839 true scaffold_7: 5234970-5241808 Capsella rubella
Carub.0007s1387 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 5240809-5241808 Capsella rubella
Carub.0007s1387 1.0kb downstream 1.0kb downstream 6839 true scaffold_7: 5233970-5240808 Capsella rubella
Carub.0007s1387 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 5233970-5234969 Capsella rubella
Carub.0007s1387 2.0kb upstream 2.0kb upstream 7839 true scaffold_7: 5234970-5242808 Capsella rubella
Carub.0007s1387 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 5240809-5242808 Capsella rubella
Carub.0007s1387 2.0kb downstream 2.0kb downstream 7839 true scaffold_7: 5232970-5240808 Capsella rubella
Carub.0007s1387 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 5232970-5234969 Capsella rubella
Carub.0007s1387 5.0kb upstream 5.0kb upstream 10839 true scaffold_7: 5234970-5245808 Capsella rubella
Carub.0007s1387 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 5240809-5245808 Capsella rubella
Carub.0007s1387 5.0kb downstream 5.0kb downstream 10839 true scaffold_7: 5229970-5240808 Capsella rubella
Carub.0007s1387 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 5229970-5234969 Capsella rubella
Carub.0007s1387 10.0kb upstream 10.0kb upstream 15839 true scaffold_7: 5234970-5250808 Capsella rubella
Carub.0007s1387 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 5240809-5250808 Capsella rubella
Carub.0007s1387 10.0kb downstream 10.0kb downstream 15839 true scaffold_7: 5224970-5240808 Capsella rubella
Carub.0007s1387 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 5224970-5234969 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374065 5261 Brassicaceae View MSA
123840370 5264 Brassicales-Malvales View MSA
124350117 5266 SBM View MSA
124253803 5268 Malvidae View MSA
124069488 5270 Rosid View MSA
123752886 5271 Pentapetalae View MSA
122795491 5272 Eudicot View MSA
122043810 5273 Angiosperm View MSA
121344247 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain