Gene : Carub.0006s1242 C. rubella v1.1
Defline:  (1 of 1) PTHR10742//PTHR10742:SF229 - AMINE OXIDASE // PROTOPORPHYRINOGEN OXIDASE 2, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  1242
Name:  ? Carub.0006s1242 Secondary Identifier:  ? PAC:39249953
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella CHLOROPHYLL-SYN Capsella rubella pathologic  
Crubella HEME-BIOSYNTHESIS-II Capsella rubella pathologic  
Crubella PWY-5918 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1242 0.5kb upstream 0.5kb upstream 4977 true scaffold_6: 4615945-4620921 Capsella rubella
Carub.0006s1242 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 4620422-4620921 Capsella rubella
Carub.0006s1242 0.5kb downstream 0.5kb downstream 4977 true scaffold_6: 4615445-4620421 Capsella rubella
Carub.0006s1242 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 4615445-4615944 Capsella rubella
Carub.0006s1242 1.0kb upstream 1.0kb upstream 5477 true scaffold_6: 4615945-4621421 Capsella rubella
Carub.0006s1242 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 4620422-4621421 Capsella rubella
Carub.0006s1242 1.0kb downstream 1.0kb downstream 5477 true scaffold_6: 4614945-4620421 Capsella rubella
Carub.0006s1242 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 4614945-4615944 Capsella rubella
Carub.0006s1242 2.0kb upstream 2.0kb upstream 6477 true scaffold_6: 4615945-4622421 Capsella rubella
Carub.0006s1242 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 4620422-4622421 Capsella rubella
Carub.0006s1242 2.0kb downstream 2.0kb downstream 6477 true scaffold_6: 4613945-4620421 Capsella rubella
Carub.0006s1242 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 4613945-4615944 Capsella rubella
Carub.0006s1242 5.0kb upstream 5.0kb upstream 9477 true scaffold_6: 4615945-4625421 Capsella rubella
Carub.0006s1242 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 4620422-4625421 Capsella rubella
Carub.0006s1242 5.0kb downstream 5.0kb downstream 9477 true scaffold_6: 4610945-4620421 Capsella rubella
Carub.0006s1242 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 4610945-4615944 Capsella rubella
Carub.0006s1242 10.0kb upstream 10.0kb upstream 14477 true scaffold_6: 4615945-4630421 Capsella rubella
Carub.0006s1242 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 4620422-4630421 Capsella rubella
Carub.0006s1242 10.0kb downstream 10.0kb downstream 14477 true scaffold_6: 4605945-4620421 Capsella rubella
Carub.0006s1242 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 4605945-4615944 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377658 5261 Brassicaceae View MSA
123829368 5264 Brassicales-Malvales View MSA
124344124 5266 SBM View MSA
124241673 5268 Malvidae View MSA
124068806 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain