Gene : Carub.0006s1233 C. rubella v1.1
Defline:  (1 of 1) PTHR31517//PTHR31517:SF7 - FAMILY NOT NAMED // PEROXIDASE 55 Genomic Order:  1233
Name:  ? Carub.0006s1233 Secondary Identifier:  ? PAC:39249987
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5466 Capsella rubella pathologic  
Crubella PWY-7214 Capsella rubella pathologic  
Crubella PWY-7445 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1233 0.5kb upstream 0.5kb upstream 1844 true scaffold_6: 4591012-4592855 Capsella rubella
Carub.0006s1233 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 4592356-4592855 Capsella rubella
Carub.0006s1233 0.5kb downstream 0.5kb downstream 1844 true scaffold_6: 4590512-4592355 Capsella rubella
Carub.0006s1233 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 4590512-4591011 Capsella rubella
Carub.0006s1233 1.0kb upstream 1.0kb upstream 2344 true scaffold_6: 4591012-4593355 Capsella rubella
Carub.0006s1233 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 4592356-4593355 Capsella rubella
Carub.0006s1233 1.0kb downstream 1.0kb downstream 2344 true scaffold_6: 4590012-4592355 Capsella rubella
Carub.0006s1233 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 4590012-4591011 Capsella rubella
Carub.0006s1233 2.0kb upstream 2.0kb upstream 3344 true scaffold_6: 4591012-4594355 Capsella rubella
Carub.0006s1233 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 4592356-4594355 Capsella rubella
Carub.0006s1233 2.0kb downstream 2.0kb downstream 3344 true scaffold_6: 4589012-4592355 Capsella rubella
Carub.0006s1233 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 4589012-4591011 Capsella rubella
Carub.0006s1233 5.0kb upstream 5.0kb upstream 6344 true scaffold_6: 4591012-4597355 Capsella rubella
Carub.0006s1233 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 4592356-4597355 Capsella rubella
Carub.0006s1233 5.0kb downstream 5.0kb downstream 6344 true scaffold_6: 4586012-4592355 Capsella rubella
Carub.0006s1233 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 4586012-4591011 Capsella rubella
Carub.0006s1233 10.0kb upstream 10.0kb upstream 11344 true scaffold_6: 4591012-4602355 Capsella rubella
Carub.0006s1233 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 4592356-4602355 Capsella rubella
Carub.0006s1233 10.0kb downstream 10.0kb downstream 11344 true scaffold_6: 4581012-4592355 Capsella rubella
Carub.0006s1233 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 4581012-4591011 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367198 5261 Brassicaceae View MSA
123838119 5264 Brassicales-Malvales View MSA
124338503 5266 SBM View MSA
124244049 5268 Malvidae View MSA
124074838 5270 Rosid View MSA
123752607 5271 Pentapetalae View MSA
122796741 5272 Eudicot View MSA
122051577 5273 Angiosperm View MSA
121351674 5274 Embryophyte View MSA
123426672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain