Gene : Carub.0007s2628 C. rubella v1.1
Defline:  (1 of 3) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  2628
Name:  ? Carub.0007s2628 Secondary Identifier:  ? PAC:39234853
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7560 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s2628 0.5kb upstream 0.5kb upstream 4183 true scaffold_7: 9964901-9969083 Capsella rubella
Carub.0007s2628 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 9968584-9969083 Capsella rubella
Carub.0007s2628 0.5kb downstream 0.5kb downstream 4183 true scaffold_7: 9964401-9968583 Capsella rubella
Carub.0007s2628 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 9964401-9964900 Capsella rubella
Carub.0007s2628 1.0kb upstream 1.0kb upstream 4683 true scaffold_7: 9964901-9969583 Capsella rubella
Carub.0007s2628 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 9968584-9969583 Capsella rubella
Carub.0007s2628 1.0kb downstream 1.0kb downstream 4683 true scaffold_7: 9963901-9968583 Capsella rubella
Carub.0007s2628 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 9963901-9964900 Capsella rubella
Carub.0007s2628 2.0kb upstream 2.0kb upstream 5683 true scaffold_7: 9964901-9970583 Capsella rubella
Carub.0007s2628 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 9968584-9970583 Capsella rubella
Carub.0007s2628 2.0kb downstream 2.0kb downstream 5683 true scaffold_7: 9962901-9968583 Capsella rubella
Carub.0007s2628 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 9962901-9964900 Capsella rubella
Carub.0007s2628 5.0kb upstream 5.0kb upstream 8683 true scaffold_7: 9964901-9973583 Capsella rubella
Carub.0007s2628 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 9968584-9973583 Capsella rubella
Carub.0007s2628 5.0kb downstream 5.0kb downstream 8683 true scaffold_7: 9959901-9968583 Capsella rubella
Carub.0007s2628 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 9959901-9964900 Capsella rubella
Carub.0007s2628 10.0kb upstream 10.0kb upstream 13683 true scaffold_7: 9964901-9978583 Capsella rubella
Carub.0007s2628 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 9968584-9978583 Capsella rubella
Carub.0007s2628 10.0kb downstream 10.0kb downstream 13683 true scaffold_7: 9954901-9968583 Capsella rubella
Carub.0007s2628 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 9954901-9964900 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369320 5261 Brassicaceae View MSA
123830613 5264 Brassicales-Malvales View MSA
124343663 5266 SBM View MSA
124239163 5268 Malvidae View MSA
124069132 5270 Rosid View MSA
123739716 5271 Pentapetalae View MSA
122785691 5272 Eudicot View MSA
122043887 5273 Angiosperm View MSA
121350299 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain