Gene : Carub.0007s3048 C. rubella v1.1
Defline:  (1 of 2) K01079 - phosphoserine phosphatase (serB, PSPH) Genomic Order:  3048
Name:  ? Carub.0007s3048 Secondary Identifier:  ? PAC:39233144
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella SER-GLYSYN-PWY Capsella rubella pathologic  
Crubella SERSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s3048 0.5kb upstream 0.5kb upstream 3384 true scaffold_7: 12894513-12897896 Capsella rubella
Carub.0007s3048 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 12894513-12895012 Capsella rubella
Carub.0007s3048 0.5kb downstream 0.5kb downstream 3384 true scaffold_7: 12895013-12898396 Capsella rubella
Carub.0007s3048 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 12897897-12898396 Capsella rubella
Carub.0007s3048 1.0kb upstream 1.0kb upstream 3884 true scaffold_7: 12894013-12897896 Capsella rubella
Carub.0007s3048 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 12894013-12895012 Capsella rubella
Carub.0007s3048 1.0kb downstream 1.0kb downstream 3884 true scaffold_7: 12895013-12898896 Capsella rubella
Carub.0007s3048 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 12897897-12898896 Capsella rubella
Carub.0007s3048 2.0kb upstream 2.0kb upstream 4884 true scaffold_7: 12893013-12897896 Capsella rubella
Carub.0007s3048 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 12893013-12895012 Capsella rubella
Carub.0007s3048 2.0kb downstream 2.0kb downstream 4884 true scaffold_7: 12895013-12899896 Capsella rubella
Carub.0007s3048 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 12897897-12899896 Capsella rubella
Carub.0007s3048 5.0kb upstream 5.0kb upstream 7884 true scaffold_7: 12890013-12897896 Capsella rubella
Carub.0007s3048 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 12890013-12895012 Capsella rubella
Carub.0007s3048 5.0kb downstream 5.0kb downstream 7884 true scaffold_7: 12895013-12902896 Capsella rubella
Carub.0007s3048 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 12897897-12902896 Capsella rubella
Carub.0007s3048 10.0kb upstream 10.0kb upstream 12884 true scaffold_7: 12885013-12897896 Capsella rubella
Carub.0007s3048 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 12885013-12895012 Capsella rubella
Carub.0007s3048 10.0kb downstream 10.0kb downstream 12884 true scaffold_7: 12895013-12907896 Capsella rubella
Carub.0007s3048 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 12897897-12907896 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360753 5261 Brassicaceae View MSA
123828386 5264 Brassicales-Malvales View MSA
124340863 5266 SBM View MSA
124243277 5268 Malvidae View MSA
124065988 5270 Rosid View MSA
123738315 5271 Pentapetalae View MSA
122789675 5272 Eudicot View MSA
122041828 5273 Angiosperm View MSA
121346713 5274 Embryophyte View MSA
123426809 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain