Gene : Carub.0007s2868 C. rubella v1.1
Defline:  (1 of 1) PTHR11946//PTHR11946:SF86 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES // METHIONINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  2868
Name:  ? Carub.0007s2868 Secondary Identifier:  ? PAC:39233173
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s2868 0.5kb upstream 0.5kb upstream 6123 true scaffold_7: 10972629-10978751 Capsella rubella
Carub.0007s2868 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 10972629-10973128 Capsella rubella
Carub.0007s2868 0.5kb downstream 0.5kb downstream 6123 true scaffold_7: 10973129-10979251 Capsella rubella
Carub.0007s2868 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 10978752-10979251 Capsella rubella
Carub.0007s2868 1.0kb upstream 1.0kb upstream 6623 true scaffold_7: 10972129-10978751 Capsella rubella
Carub.0007s2868 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 10972129-10973128 Capsella rubella
Carub.0007s2868 1.0kb downstream 1.0kb downstream 6623 true scaffold_7: 10973129-10979751 Capsella rubella
Carub.0007s2868 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 10978752-10979751 Capsella rubella
Carub.0007s2868 2.0kb upstream 2.0kb upstream 7623 true scaffold_7: 10971129-10978751 Capsella rubella
Carub.0007s2868 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 10971129-10973128 Capsella rubella
Carub.0007s2868 2.0kb downstream 2.0kb downstream 7623 true scaffold_7: 10973129-10980751 Capsella rubella
Carub.0007s2868 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 10978752-10980751 Capsella rubella
Carub.0007s2868 5.0kb upstream 5.0kb upstream 10623 true scaffold_7: 10968129-10978751 Capsella rubella
Carub.0007s2868 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 10968129-10973128 Capsella rubella
Carub.0007s2868 5.0kb downstream 5.0kb downstream 10623 true scaffold_7: 10973129-10983751 Capsella rubella
Carub.0007s2868 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 10978752-10983751 Capsella rubella
Carub.0007s2868 10.0kb upstream 10.0kb upstream 15623 true scaffold_7: 10963129-10978751 Capsella rubella
Carub.0007s2868 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 10963129-10973128 Capsella rubella
Carub.0007s2868 10.0kb downstream 10.0kb downstream 15623 true scaffold_7: 10973129-10988751 Capsella rubella
Carub.0007s2868 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 10978752-10988751 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367230 5261 Brassicaceae View MSA
123828718 5264 Brassicales-Malvales View MSA
124338406 5266 SBM View MSA
124247313 5268 Malvidae View MSA
124066402 5270 Rosid View MSA
123739463 5271 Pentapetalae View MSA
122793532 5272 Eudicot View MSA
122041539 5273 Angiosperm View MSA
121348816 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain