Gene : Carub.0006s1276 C. rubella v1.1
Defline:  (1 of 1) PTHR11822:SF5 - ISOCITRATE DEHYDROGENASE [NADP], CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  1276
Name:  ? Carub.0006s1276 Secondary Identifier:  ? PAC:39247166
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6549 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1276 0.5kb upstream 0.5kb upstream 3980 true scaffold_6: 4742669-4746648 Capsella rubella
Carub.0006s1276 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 4746149-4746648 Capsella rubella
Carub.0006s1276 0.5kb downstream 0.5kb downstream 3980 true scaffold_6: 4742169-4746148 Capsella rubella
Carub.0006s1276 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 4742169-4742668 Capsella rubella
Carub.0006s1276 1.0kb upstream 1.0kb upstream 4480 true scaffold_6: 4742669-4747148 Capsella rubella
Carub.0006s1276 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 4746149-4747148 Capsella rubella
Carub.0006s1276 1.0kb downstream 1.0kb downstream 4480 true scaffold_6: 4741669-4746148 Capsella rubella
Carub.0006s1276 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 4741669-4742668 Capsella rubella
Carub.0006s1276 2.0kb upstream 2.0kb upstream 5480 true scaffold_6: 4742669-4748148 Capsella rubella
Carub.0006s1276 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 4746149-4748148 Capsella rubella
Carub.0006s1276 2.0kb downstream 2.0kb downstream 5480 true scaffold_6: 4740669-4746148 Capsella rubella
Carub.0006s1276 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 4740669-4742668 Capsella rubella
Carub.0006s1276 5.0kb upstream 5.0kb upstream 8480 true scaffold_6: 4742669-4751148 Capsella rubella
Carub.0006s1276 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 4746149-4751148 Capsella rubella
Carub.0006s1276 5.0kb downstream 5.0kb downstream 8480 true scaffold_6: 4737669-4746148 Capsella rubella
Carub.0006s1276 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 4737669-4742668 Capsella rubella
Carub.0006s1276 10.0kb upstream 10.0kb upstream 13480 true scaffold_6: 4742669-4756148 Capsella rubella
Carub.0006s1276 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 4746149-4756148 Capsella rubella
Carub.0006s1276 10.0kb downstream 10.0kb downstream 13480 true scaffold_6: 4732669-4746148 Capsella rubella
Carub.0006s1276 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 4732669-4742668 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041513 5273 Angiosperm View MSA
122367342 5261 Brassicaceae View MSA
123829128 5264 Brassicales-Malvales View MSA
124338965 5266 SBM View MSA
124253580 5268 Malvidae View MSA
124066348 5270 Rosid View MSA
123740516 5271 Pentapetalae View MSA
122791819 5272 Eudicot View MSA
121349846 5274 Embryophyte View MSA
123426624 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain