Gene : Carub.0007s2748 C. rubella v1.1
Defline:  (1 of 3) 1.13.11.53//1.13.11.54 - Acireductone dioxygenase (Ni(2+)-requiring) / E-2 // Acireductone dioxygenase (Fe(2+)-requiring) / E-2' Genomic Order:  2748
Name:  ? Carub.0007s2748 Secondary Identifier:  ? PAC:39233226
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-4361 Capsella rubella pathologic  
Crubella PWY-5389 Capsella rubella pathologic  
Crubella PWY-7270 Capsella rubella pathologic  
Crubella PWY-7528 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s2748 0.5kb upstream 0.5kb upstream 2243 true scaffold_7: 10481654-10483896 Capsella rubella
Carub.0007s2748 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 10481654-10482153 Capsella rubella
Carub.0007s2748 0.5kb downstream 0.5kb downstream 2243 true scaffold_7: 10482154-10484396 Capsella rubella
Carub.0007s2748 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 10483897-10484396 Capsella rubella
Carub.0007s2748 1.0kb upstream 1.0kb upstream 2743 true scaffold_7: 10481154-10483896 Capsella rubella
Carub.0007s2748 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 10481154-10482153 Capsella rubella
Carub.0007s2748 1.0kb downstream 1.0kb downstream 2743 true scaffold_7: 10482154-10484896 Capsella rubella
Carub.0007s2748 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 10483897-10484896 Capsella rubella
Carub.0007s2748 2.0kb upstream 2.0kb upstream 3743 true scaffold_7: 10480154-10483896 Capsella rubella
Carub.0007s2748 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 10480154-10482153 Capsella rubella
Carub.0007s2748 2.0kb downstream 2.0kb downstream 3743 true scaffold_7: 10482154-10485896 Capsella rubella
Carub.0007s2748 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 10483897-10485896 Capsella rubella
Carub.0007s2748 5.0kb upstream 5.0kb upstream 6743 true scaffold_7: 10477154-10483896 Capsella rubella
Carub.0007s2748 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 10477154-10482153 Capsella rubella
Carub.0007s2748 5.0kb downstream 5.0kb downstream 6743 true scaffold_7: 10482154-10488896 Capsella rubella
Carub.0007s2748 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 10483897-10488896 Capsella rubella
Carub.0007s2748 10.0kb upstream 10.0kb upstream 11743 true scaffold_7: 10472154-10483896 Capsella rubella
Carub.0007s2748 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 10472154-10482153 Capsella rubella
Carub.0007s2748 10.0kb downstream 10.0kb downstream 11743 true scaffold_7: 10482154-10493896 Capsella rubella
Carub.0007s2748 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 10483897-10493896 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378122 5261 Brassicaceae View MSA
123834658 5264 Brassicales-Malvales View MSA
124340730 5266 SBM View MSA
124241214 5268 Malvidae View MSA
124070123 5270 Rosid View MSA
123741202 5271 Pentapetalae View MSA
122793339 5272 Eudicot View MSA
122046510 5273 Angiosperm View MSA
121343851 5274 Embryophyte View MSA
123424670 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain