Gene : Carub.0007s2522 C. rubella v1.1
Defline:  (1 of 1) PTHR10742:SF284 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A Genomic Order:  2522
Name:  ? Carub.0007s2522 Secondary Identifier:  ? PAC:39235131
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6441 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s2522 0.5kb upstream 0.5kb upstream 8308 true scaffold_7: 9575513-9583820 Capsella rubella
Carub.0007s2522 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 9583321-9583820 Capsella rubella
Carub.0007s2522 0.5kb downstream 0.5kb downstream 8308 true scaffold_7: 9575013-9583320 Capsella rubella
Carub.0007s2522 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 9575013-9575512 Capsella rubella
Carub.0007s2522 1.0kb upstream 1.0kb upstream 8808 true scaffold_7: 9575513-9584320 Capsella rubella
Carub.0007s2522 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 9583321-9584320 Capsella rubella
Carub.0007s2522 1.0kb downstream 1.0kb downstream 8808 true scaffold_7: 9574513-9583320 Capsella rubella
Carub.0007s2522 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 9574513-9575512 Capsella rubella
Carub.0007s2522 2.0kb upstream 2.0kb upstream 9808 true scaffold_7: 9575513-9585320 Capsella rubella
Carub.0007s2522 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 9583321-9585320 Capsella rubella
Carub.0007s2522 2.0kb downstream 2.0kb downstream 9808 true scaffold_7: 9573513-9583320 Capsella rubella
Carub.0007s2522 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 9573513-9575512 Capsella rubella
Carub.0007s2522 5.0kb upstream 5.0kb upstream 12808 true scaffold_7: 9575513-9588320 Capsella rubella
Carub.0007s2522 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 9583321-9588320 Capsella rubella
Carub.0007s2522 5.0kb downstream 5.0kb downstream 12808 true scaffold_7: 9570513-9583320 Capsella rubella
Carub.0007s2522 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 9570513-9575512 Capsella rubella
Carub.0007s2522 10.0kb upstream 10.0kb upstream 17808 true scaffold_7: 9575513-9593320 Capsella rubella
Carub.0007s2522 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 9583321-9593320 Capsella rubella
Carub.0007s2522 10.0kb downstream 10.0kb downstream 17808 true scaffold_7: 9565513-9583320 Capsella rubella
Carub.0007s2522 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 9565513-9575512 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369100 5261 Brassicaceae View MSA
123827782 5264 Brassicales-Malvales View MSA
124338849 5266 SBM View MSA
124238946 5268 Malvidae View MSA
124062670 5270 Rosid View MSA
123738203 5271 Pentapetalae View MSA
122790962 5272 Eudicot View MSA
122046463 5273 Angiosperm View MSA
121349079 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain