Gene : Carub.0007s2309 C. rubella v1.1
Defline:  (1 of 1) PTHR12526:SF304 - STARCH SYNTHASE 4, CHLOROPLASTIC/AMYLOPLASTIC-RELATED Genomic Order:  2309
Name:  ? Carub.0007s2309 Secondary Identifier:  ? PAC:39234489
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella GLYCOGENSYNTH-PWY Capsella rubella pathologic  
Crubella PWY-622 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s2309 0.5kb upstream 0.5kb upstream 5703 true scaffold_7: 8726856-8732558 Capsella rubella
Carub.0007s2309 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 8732059-8732558 Capsella rubella
Carub.0007s2309 0.5kb downstream 0.5kb downstream 5703 true scaffold_7: 8726356-8732058 Capsella rubella
Carub.0007s2309 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 8726356-8726855 Capsella rubella
Carub.0007s2309 1.0kb upstream 1.0kb upstream 6203 true scaffold_7: 8726856-8733058 Capsella rubella
Carub.0007s2309 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 8732059-8733058 Capsella rubella
Carub.0007s2309 1.0kb downstream 1.0kb downstream 6203 true scaffold_7: 8725856-8732058 Capsella rubella
Carub.0007s2309 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 8725856-8726855 Capsella rubella
Carub.0007s2309 2.0kb upstream 2.0kb upstream 7203 true scaffold_7: 8726856-8734058 Capsella rubella
Carub.0007s2309 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 8732059-8734058 Capsella rubella
Carub.0007s2309 2.0kb downstream 2.0kb downstream 7203 true scaffold_7: 8724856-8732058 Capsella rubella
Carub.0007s2309 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 8724856-8726855 Capsella rubella
Carub.0007s2309 5.0kb upstream 5.0kb upstream 10203 true scaffold_7: 8726856-8737058 Capsella rubella
Carub.0007s2309 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 8732059-8737058 Capsella rubella
Carub.0007s2309 5.0kb downstream 5.0kb downstream 10203 true scaffold_7: 8721856-8732058 Capsella rubella
Carub.0007s2309 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 8721856-8726855 Capsella rubella
Carub.0007s2309 10.0kb upstream 10.0kb upstream 15203 true scaffold_7: 8726856-8742058 Capsella rubella
Carub.0007s2309 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 8732059-8742058 Capsella rubella
Carub.0007s2309 10.0kb downstream 10.0kb downstream 15203 true scaffold_7: 8716856-8732058 Capsella rubella
Carub.0007s2309 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 8716856-8726855 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360271 5261 Brassicaceae View MSA
123829886 5264 Brassicales-Malvales View MSA
124343403 5266 SBM View MSA
124243663 5268 Malvidae View MSA
124062542 5270 Rosid View MSA
123737586 5271 Pentapetalae View MSA
122786746 5272 Eudicot View MSA
122042885 5273 Angiosperm View MSA
121344527 5274 Embryophyte View MSA
123428648 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain