Gene : Carub.0007s2036 C. rubella v1.1
Defline:  (1 of 1) PTHR13763//PTHR13763:SF1 - BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 // PROTEIN BREAST CANCER SUSCEPTIBILITY 1 HOMOLOG Genomic Order:  2036
Name:  ? Carub.0007s2036 Secondary Identifier:  ? PAC:39232488
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s2036 0.5kb upstream 0.5kb upstream 5313 true scaffold_7: 7667466-7672778 Capsella rubella
Carub.0007s2036 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 7672279-7672778 Capsella rubella
Carub.0007s2036 0.5kb downstream 0.5kb downstream 5313 true scaffold_7: 7666966-7672278 Capsella rubella
Carub.0007s2036 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 7666966-7667465 Capsella rubella
Carub.0007s2036 1.0kb upstream 1.0kb upstream 5813 true scaffold_7: 7667466-7673278 Capsella rubella
Carub.0007s2036 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 7672279-7673278 Capsella rubella
Carub.0007s2036 1.0kb downstream 1.0kb downstream 5813 true scaffold_7: 7666466-7672278 Capsella rubella
Carub.0007s2036 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 7666466-7667465 Capsella rubella
Carub.0007s2036 2.0kb upstream 2.0kb upstream 6813 true scaffold_7: 7667466-7674278 Capsella rubella
Carub.0007s2036 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 7672279-7674278 Capsella rubella
Carub.0007s2036 2.0kb downstream 2.0kb downstream 6813 true scaffold_7: 7665466-7672278 Capsella rubella
Carub.0007s2036 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 7665466-7667465 Capsella rubella
Carub.0007s2036 5.0kb upstream 5.0kb upstream 9813 true scaffold_7: 7667466-7677278 Capsella rubella
Carub.0007s2036 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 7672279-7677278 Capsella rubella
Carub.0007s2036 5.0kb downstream 5.0kb downstream 9813 true scaffold_7: 7662466-7672278 Capsella rubella
Carub.0007s2036 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 7662466-7667465 Capsella rubella
Carub.0007s2036 10.0kb upstream 10.0kb upstream 14813 true scaffold_7: 7667466-7682278 Capsella rubella
Carub.0007s2036 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 7672279-7682278 Capsella rubella
Carub.0007s2036 10.0kb downstream 10.0kb downstream 14813 true scaffold_7: 7657466-7672278 Capsella rubella
Carub.0007s2036 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 7657466-7667465 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374369 5261 Brassicaceae View MSA
123828360 5264 Brassicales-Malvales View MSA
124321529 5266 SBM View MSA
124252293 5268 Malvidae View MSA
124069553 5270 Rosid View MSA
123745741 5271 Pentapetalae View MSA
122790490 5272 Eudicot View MSA
122049651 5273 Angiosperm View MSA
121346797 5274 Embryophyte View MSA
123380447 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain