Gene : Carub.0007s2139 C. rubella v1.1
Defline:  (1 of 5) PTHR11177:SF219 - CHITINASE-LIKE PROTEIN-RELATED Genomic Order:  2139
Name:  ? Carub.0007s2139 Secondary Identifier:  ? PAC:39234618
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6902 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s2139 0.5kb upstream 0.5kb upstream 2482 true scaffold_7: 8074532-8077013 Capsella rubella
Carub.0007s2139 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 8074532-8075031 Capsella rubella
Carub.0007s2139 0.5kb downstream 0.5kb downstream 2482 true scaffold_7: 8075032-8077513 Capsella rubella
Carub.0007s2139 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 8077014-8077513 Capsella rubella
Carub.0007s2139 1.0kb upstream 1.0kb upstream 2982 true scaffold_7: 8074032-8077013 Capsella rubella
Carub.0007s2139 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 8074032-8075031 Capsella rubella
Carub.0007s2139 1.0kb downstream 1.0kb downstream 2982 true scaffold_7: 8075032-8078013 Capsella rubella
Carub.0007s2139 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 8077014-8078013 Capsella rubella
Carub.0007s2139 2.0kb upstream 2.0kb upstream 3982 true scaffold_7: 8073032-8077013 Capsella rubella
Carub.0007s2139 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 8073032-8075031 Capsella rubella
Carub.0007s2139 2.0kb downstream 2.0kb downstream 3982 true scaffold_7: 8075032-8079013 Capsella rubella
Carub.0007s2139 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 8077014-8079013 Capsella rubella
Carub.0007s2139 5.0kb upstream 5.0kb upstream 6982 true scaffold_7: 8070032-8077013 Capsella rubella
Carub.0007s2139 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 8070032-8075031 Capsella rubella
Carub.0007s2139 5.0kb downstream 5.0kb downstream 6982 true scaffold_7: 8075032-8082013 Capsella rubella
Carub.0007s2139 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 8077014-8082013 Capsella rubella
Carub.0007s2139 10.0kb upstream 10.0kb upstream 11982 true scaffold_7: 8065032-8077013 Capsella rubella
Carub.0007s2139 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 8065032-8075031 Capsella rubella
Carub.0007s2139 10.0kb downstream 10.0kb downstream 11982 true scaffold_7: 8075032-8087013 Capsella rubella
Carub.0007s2139 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 8077014-8087013 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362004 5261 Brassicaceae View MSA
123831557 5264 Brassicales-Malvales View MSA
124339327 5266 SBM View MSA
124253771 5268 Malvidae View MSA
124068556 5270 Rosid View MSA
123750744 5271 Pentapetalae View MSA
122797322 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain