Gene : Carub.0007s1988 C. rubella v1.1
Defline:  (1 of 2) 2.7.1.91 - Sphinganine kinase / Dihydrosphingosine kinase Genomic Order:  1988
Name:  ? Carub.0007s1988 Secondary Identifier:  ? PAC:39235508
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5129 Capsella rubella pathologic  
Crubella PWY-6483 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1988 0.5kb upstream 0.5kb upstream 3581 true scaffold_7: 7441761-7445341 Capsella rubella
Carub.0007s1988 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 7444842-7445341 Capsella rubella
Carub.0007s1988 0.5kb downstream 0.5kb downstream 3581 true scaffold_7: 7441261-7444841 Capsella rubella
Carub.0007s1988 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 7441261-7441760 Capsella rubella
Carub.0007s1988 1.0kb upstream 1.0kb upstream 4081 true scaffold_7: 7441761-7445841 Capsella rubella
Carub.0007s1988 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 7444842-7445841 Capsella rubella
Carub.0007s1988 1.0kb downstream 1.0kb downstream 4081 true scaffold_7: 7440761-7444841 Capsella rubella
Carub.0007s1988 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 7440761-7441760 Capsella rubella
Carub.0007s1988 2.0kb upstream 2.0kb upstream 5081 true scaffold_7: 7441761-7446841 Capsella rubella
Carub.0007s1988 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 7444842-7446841 Capsella rubella
Carub.0007s1988 2.0kb downstream 2.0kb downstream 5081 true scaffold_7: 7439761-7444841 Capsella rubella
Carub.0007s1988 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 7439761-7441760 Capsella rubella
Carub.0007s1988 5.0kb upstream 5.0kb upstream 8081 true scaffold_7: 7441761-7449841 Capsella rubella
Carub.0007s1988 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 7444842-7449841 Capsella rubella
Carub.0007s1988 5.0kb downstream 5.0kb downstream 8081 true scaffold_7: 7436761-7444841 Capsella rubella
Carub.0007s1988 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 7436761-7441760 Capsella rubella
Carub.0007s1988 10.0kb upstream 10.0kb upstream 13081 true scaffold_7: 7441761-7454841 Capsella rubella
Carub.0007s1988 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 7444842-7454841 Capsella rubella
Carub.0007s1988 10.0kb downstream 10.0kb downstream 13081 true scaffold_7: 7431761-7444841 Capsella rubella
Carub.0007s1988 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 7431761-7441760 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366251 5261 Brassicaceae View MSA
123799137 5264 Brassicales-Malvales View MSA
124296686 5266 SBM View MSA
124247883 5268 Malvidae View MSA
124066639 5270 Rosid View MSA
123737091 5271 Pentapetalae View MSA
122793625 5272 Eudicot View MSA
122045440 5273 Angiosperm View MSA
121350923 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain