Gene : Carub.0007s1987 C. rubella v1.1
Defline:  (1 of 2) 2.7.1.91 - Sphinganine kinase / Dihydrosphingosine kinase Genomic Order:  1987
Name:  ? Carub.0007s1987 Secondary Identifier:  ? PAC:39234620
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5129 Capsella rubella pathologic  
Crubella PWY-6483 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1987 0.5kb upstream 0.5kb upstream 3924 true scaffold_7: 7438337-7442260 Capsella rubella
Carub.0007s1987 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 7441761-7442260 Capsella rubella
Carub.0007s1987 0.5kb downstream 0.5kb downstream 3924 true scaffold_7: 7437837-7441760 Capsella rubella
Carub.0007s1987 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 7437837-7438336 Capsella rubella
Carub.0007s1987 1.0kb upstream 1.0kb upstream 4424 true scaffold_7: 7438337-7442760 Capsella rubella
Carub.0007s1987 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 7441761-7442760 Capsella rubella
Carub.0007s1987 1.0kb downstream 1.0kb downstream 4424 true scaffold_7: 7437337-7441760 Capsella rubella
Carub.0007s1987 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 7437337-7438336 Capsella rubella
Carub.0007s1987 2.0kb upstream 2.0kb upstream 5424 true scaffold_7: 7438337-7443760 Capsella rubella
Carub.0007s1987 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 7441761-7443760 Capsella rubella
Carub.0007s1987 2.0kb downstream 2.0kb downstream 5424 true scaffold_7: 7436337-7441760 Capsella rubella
Carub.0007s1987 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 7436337-7438336 Capsella rubella
Carub.0007s1987 5.0kb upstream 5.0kb upstream 8424 true scaffold_7: 7438337-7446760 Capsella rubella
Carub.0007s1987 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 7441761-7446760 Capsella rubella
Carub.0007s1987 5.0kb downstream 5.0kb downstream 8424 true scaffold_7: 7433337-7441760 Capsella rubella
Carub.0007s1987 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 7433337-7438336 Capsella rubella
Carub.0007s1987 10.0kb upstream 10.0kb upstream 13424 true scaffold_7: 7438337-7451760 Capsella rubella
Carub.0007s1987 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 7441761-7451760 Capsella rubella
Carub.0007s1987 10.0kb downstream 10.0kb downstream 13424 true scaffold_7: 7428337-7441760 Capsella rubella
Carub.0007s1987 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 7428337-7438336 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369288 5261 Brassicaceae View MSA
123827390 5264 Brassicales-Malvales View MSA
124339583 5266 SBM View MSA
124247883 5268 Malvidae View MSA
124066639 5270 Rosid View MSA
123737091 5271 Pentapetalae View MSA
122793625 5272 Eudicot View MSA
122045440 5273 Angiosperm View MSA
121350923 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain