Gene : Carub.0006s3602 C. rubella v1.1
Defline:  (1 of 1) PTHR12786//PTHR12786:SF1 - SPLICING FACTOR SF3A-RELATED // PROTEIN SDE2 HOMOLOG Genomic Order:  3602
Name:  ? Carub.0006s3602 Secondary Identifier:  ? PAC:39249683
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s3602 0.5kb upstream 0.5kb upstream 2323 true scaffold_6: 16170665-16172987 Capsella rubella
Carub.0006s3602 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 16172488-16172987 Capsella rubella
Carub.0006s3602 0.5kb downstream 0.5kb downstream 2323 true scaffold_6: 16170165-16172487 Capsella rubella
Carub.0006s3602 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 16170165-16170664 Capsella rubella
Carub.0006s3602 1.0kb upstream 1.0kb upstream 2823 true scaffold_6: 16170665-16173487 Capsella rubella
Carub.0006s3602 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 16172488-16173487 Capsella rubella
Carub.0006s3602 1.0kb downstream 1.0kb downstream 2823 true scaffold_6: 16169665-16172487 Capsella rubella
Carub.0006s3602 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 16169665-16170664 Capsella rubella
Carub.0006s3602 2.0kb upstream 2.0kb upstream 3823 true scaffold_6: 16170665-16174487 Capsella rubella
Carub.0006s3602 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 16172488-16174487 Capsella rubella
Carub.0006s3602 2.0kb downstream 2.0kb downstream 3823 true scaffold_6: 16168665-16172487 Capsella rubella
Carub.0006s3602 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 16168665-16170664 Capsella rubella
Carub.0006s3602 5.0kb upstream 5.0kb upstream 6823 true scaffold_6: 16170665-16177487 Capsella rubella
Carub.0006s3602 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 16172488-16177487 Capsella rubella
Carub.0006s3602 5.0kb downstream 5.0kb downstream 6823 true scaffold_6: 16165665-16172487 Capsella rubella
Carub.0006s3602 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 16165665-16170664 Capsella rubella
Carub.0006s3602 10.0kb upstream 10.0kb upstream 11823 true scaffold_6: 16170665-16182487 Capsella rubella
Carub.0006s3602 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 16172488-16182487 Capsella rubella
Carub.0006s3602 10.0kb downstream 10.0kb downstream 11823 true scaffold_6: 16160665-16172487 Capsella rubella
Carub.0006s3602 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 16160665-16170664 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366035 5261 Brassicaceae View MSA
123839812 5264 Brassicales-Malvales View MSA
124341955 5266 SBM View MSA
124240359 5268 Malvidae View MSA
124060916 5270 Rosid View MSA
123743945 5271 Pentapetalae View MSA
122790858 5272 Eudicot View MSA
122047648 5273 Angiosperm View MSA
121345169 5274 Embryophyte View MSA
123427367 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain