Gene : Carub.0006s3695 C. rubella v1.1
Defline:  (1 of 3) PTHR11972//PTHR11972:SF41 - NADPH OXIDASE // FERRIC REDUCTION OXIDASE 2-RELATED Genomic Order:  3695
Name:  ? Carub.0006s3695 Secondary Identifier:  ? PAC:39246684
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5934 Capsella rubella pathologic  
Crubella PWY-6854 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s3695 0.5kb upstream 0.5kb upstream 3373 true scaffold_6: 16495183-16498555 Capsella rubella
Carub.0006s3695 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 16498056-16498555 Capsella rubella
Carub.0006s3695 0.5kb downstream 0.5kb downstream 3373 true scaffold_6: 16494683-16498055 Capsella rubella
Carub.0006s3695 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 16494683-16495182 Capsella rubella
Carub.0006s3695 1.0kb upstream 1.0kb upstream 3873 true scaffold_6: 16495183-16499055 Capsella rubella
Carub.0006s3695 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 16498056-16499055 Capsella rubella
Carub.0006s3695 1.0kb downstream 1.0kb downstream 3873 true scaffold_6: 16494183-16498055 Capsella rubella
Carub.0006s3695 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 16494183-16495182 Capsella rubella
Carub.0006s3695 2.0kb upstream 2.0kb upstream 4873 true scaffold_6: 16495183-16500055 Capsella rubella
Carub.0006s3695 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 16498056-16500055 Capsella rubella
Carub.0006s3695 2.0kb downstream 2.0kb downstream 4873 true scaffold_6: 16493183-16498055 Capsella rubella
Carub.0006s3695 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 16493183-16495182 Capsella rubella
Carub.0006s3695 5.0kb upstream 5.0kb upstream 7873 true scaffold_6: 16495183-16503055 Capsella rubella
Carub.0006s3695 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 16498056-16503055 Capsella rubella
Carub.0006s3695 5.0kb downstream 5.0kb downstream 7873 true scaffold_6: 16490183-16498055 Capsella rubella
Carub.0006s3695 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 16490183-16495182 Capsella rubella
Carub.0006s3695 10.0kb upstream 10.0kb upstream 12873 true scaffold_6: 16495183-16508055 Capsella rubella
Carub.0006s3695 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 16498056-16508055 Capsella rubella
Carub.0006s3695 10.0kb downstream 10.0kb downstream 12873 true scaffold_6: 16485183-16498055 Capsella rubella
Carub.0006s3695 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 16485183-16495182 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370403 5261 Brassicaceae View MSA
123827369 5264 Brassicales-Malvales View MSA
124337486 5266 SBM View MSA
124250584 5268 Malvidae View MSA
124071281 5270 Rosid View MSA
123746738 5271 Pentapetalae View MSA
122787767 5272 Eudicot View MSA
122051677 5273 Angiosperm View MSA
121345980 5274 Embryophyte View MSA
123428579 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain