Gene : Carub.0006s3330 C. rubella v1.1
Defline:  (1 of 2) PTHR19384:SF54 - FERREDOXIN--NADP REDUCTASE, ROOT ISOZYME 1, CHLOROPLASTIC-RELATED Genomic Order:  3330
Name:  ? Carub.0006s3330 Secondary Identifier:  ? PAC:39249591
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PHOTOALL-PWY Capsella rubella pathologic  
Crubella PWY-101 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s3330 0.5kb upstream 0.5kb upstream 2687 true scaffold_6: 15050503-15053189 Capsella rubella
Carub.0006s3330 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 15052690-15053189 Capsella rubella
Carub.0006s3330 0.5kb downstream 0.5kb downstream 2687 true scaffold_6: 15050003-15052689 Capsella rubella
Carub.0006s3330 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 15050003-15050502 Capsella rubella
Carub.0006s3330 1.0kb upstream 1.0kb upstream 3187 true scaffold_6: 15050503-15053689 Capsella rubella
Carub.0006s3330 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 15052690-15053689 Capsella rubella
Carub.0006s3330 1.0kb downstream 1.0kb downstream 3187 true scaffold_6: 15049503-15052689 Capsella rubella
Carub.0006s3330 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 15049503-15050502 Capsella rubella
Carub.0006s3330 2.0kb upstream 2.0kb upstream 4187 true scaffold_6: 15050503-15054689 Capsella rubella
Carub.0006s3330 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 15052690-15054689 Capsella rubella
Carub.0006s3330 2.0kb downstream 2.0kb downstream 4187 true scaffold_6: 15048503-15052689 Capsella rubella
Carub.0006s3330 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 15048503-15050502 Capsella rubella
Carub.0006s3330 5.0kb upstream 5.0kb upstream 7187 true scaffold_6: 15050503-15057689 Capsella rubella
Carub.0006s3330 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 15052690-15057689 Capsella rubella
Carub.0006s3330 5.0kb downstream 5.0kb downstream 7187 true scaffold_6: 15045503-15052689 Capsella rubella
Carub.0006s3330 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 15045503-15050502 Capsella rubella
Carub.0006s3330 10.0kb upstream 10.0kb upstream 12187 true scaffold_6: 15050503-15062689 Capsella rubella
Carub.0006s3330 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 15052690-15062689 Capsella rubella
Carub.0006s3330 10.0kb downstream 10.0kb downstream 12187 true scaffold_6: 15040503-15052689 Capsella rubella
Carub.0006s3330 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 15040503-15050502 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124337411 5266 SBM View MSA
122378826 5261 Brassicaceae View MSA
123837439 5264 Brassicales-Malvales View MSA
124248953 5268 Malvidae View MSA
124064755 5270 Rosid View MSA
123736625 5271 Pentapetalae View MSA
122790491 5272 Eudicot View MSA
122045006 5273 Angiosperm View MSA
121347443 5274 Embryophyte View MSA
123424825 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain