Gene : Carub.0006s3219 C. rubella v1.1
Defline:  (1 of 1) PTHR11946:SF7 - LEUCINE--TRNA LIGASE, MITOCHONDRIAL-RELATED Genomic Order:  3219
Name:  ? Carub.0006s3219 Secondary Identifier:  ? PAC:39247604
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s3219 0.5kb upstream 0.5kb upstream 5520 true scaffold_6: 14583235-14588754 Capsella rubella
Carub.0006s3219 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 14583235-14583734 Capsella rubella
Carub.0006s3219 0.5kb downstream 0.5kb downstream 5520 true scaffold_6: 14583735-14589254 Capsella rubella
Carub.0006s3219 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 14588755-14589254 Capsella rubella
Carub.0006s3219 1.0kb upstream 1.0kb upstream 6020 true scaffold_6: 14582735-14588754 Capsella rubella
Carub.0006s3219 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 14582735-14583734 Capsella rubella
Carub.0006s3219 1.0kb downstream 1.0kb downstream 6020 true scaffold_6: 14583735-14589754 Capsella rubella
Carub.0006s3219 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 14588755-14589754 Capsella rubella
Carub.0006s3219 2.0kb upstream 2.0kb upstream 7020 true scaffold_6: 14581735-14588754 Capsella rubella
Carub.0006s3219 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 14581735-14583734 Capsella rubella
Carub.0006s3219 2.0kb downstream 2.0kb downstream 7020 true scaffold_6: 14583735-14590754 Capsella rubella
Carub.0006s3219 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 14588755-14590754 Capsella rubella
Carub.0006s3219 5.0kb upstream 5.0kb upstream 10020 true scaffold_6: 14578735-14588754 Capsella rubella
Carub.0006s3219 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 14578735-14583734 Capsella rubella
Carub.0006s3219 5.0kb downstream 5.0kb downstream 10020 true scaffold_6: 14583735-14593754 Capsella rubella
Carub.0006s3219 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 14588755-14593754 Capsella rubella
Carub.0006s3219 10.0kb upstream 10.0kb upstream 15020 true scaffold_6: 14573735-14588754 Capsella rubella
Carub.0006s3219 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 14573735-14583734 Capsella rubella
Carub.0006s3219 10.0kb downstream 10.0kb downstream 15020 true scaffold_6: 14583735-14598754 Capsella rubella
Carub.0006s3219 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 14588755-14598754 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041369 5273 Angiosperm View MSA
122361495 5261 Brassicaceae View MSA
123829481 5264 Brassicales-Malvales View MSA
124336430 5266 SBM View MSA
124239362 5268 Malvidae View MSA
124073421 5270 Rosid View MSA
123749958 5271 Pentapetalae View MSA
122789048 5272 Eudicot View MSA
121347479 5274 Embryophyte View MSA
123424257 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain