Gene : Carub.0006s2794 C. rubella v1.1
Defline:  (1 of 1) PTHR31209//PTHR31209:SF0 - FAMILY NOT NAMED // COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE Genomic Order:  2794
Name:  ? Carub.0006s2794 Secondary Identifier:  ? PAC:39248668
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella GLUCONEO-PWY Capsella rubella pathologic  
Crubella PWY-1042 Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY-5723 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s2794 0.5kb upstream 0.5kb upstream 2746 true scaffold_6: 12616011-12618756 Capsella rubella
Carub.0006s2794 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 12618257-12618756 Capsella rubella
Carub.0006s2794 0.5kb downstream 0.5kb downstream 2746 true scaffold_6: 12615511-12618256 Capsella rubella
Carub.0006s2794 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 12615511-12616010 Capsella rubella
Carub.0006s2794 1.0kb upstream 1.0kb upstream 3246 true scaffold_6: 12616011-12619256 Capsella rubella
Carub.0006s2794 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 12618257-12619256 Capsella rubella
Carub.0006s2794 1.0kb downstream 1.0kb downstream 3246 true scaffold_6: 12615011-12618256 Capsella rubella
Carub.0006s2794 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 12615011-12616010 Capsella rubella
Carub.0006s2794 2.0kb upstream 2.0kb upstream 4246 true scaffold_6: 12616011-12620256 Capsella rubella
Carub.0006s2794 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 12618257-12620256 Capsella rubella
Carub.0006s2794 2.0kb downstream 2.0kb downstream 4246 true scaffold_6: 12614011-12618256 Capsella rubella
Carub.0006s2794 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 12614011-12616010 Capsella rubella
Carub.0006s2794 5.0kb upstream 5.0kb upstream 7246 true scaffold_6: 12616011-12623256 Capsella rubella
Carub.0006s2794 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 12618257-12623256 Capsella rubella
Carub.0006s2794 5.0kb downstream 5.0kb downstream 7246 true scaffold_6: 12611011-12618256 Capsella rubella
Carub.0006s2794 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 12611011-12616010 Capsella rubella
Carub.0006s2794 10.0kb upstream 10.0kb upstream 12246 true scaffold_6: 12616011-12628256 Capsella rubella
Carub.0006s2794 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 12618257-12628256 Capsella rubella
Carub.0006s2794 10.0kb downstream 10.0kb downstream 12246 true scaffold_6: 12606011-12618256 Capsella rubella
Carub.0006s2794 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 12606011-12616010 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381477 5261 Brassicaceae View MSA
123833203 5264 Brassicales-Malvales View MSA
124336436 5266 SBM View MSA
124239348 5268 Malvidae View MSA
124068115 5270 Rosid View MSA
123752475 5271 Pentapetalae View MSA
122786354 5272 Eudicot View MSA
122046055 5273 Angiosperm View MSA
121343817 5274 Embryophyte View MSA
123428865 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain