Gene : Carub.0006s3093 C. rubella v1.1
Defline:  (1 of 1) 2.3.3.10 - Hydroxymethylglutaryl-CoA synthase / Hydroxymethylglutaryl coenzyme alpha-condensing enzyme Genomic Order:  3093
Name:  ? Carub.0006s3093 Secondary Identifier:  ? PAC:39249934
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5910 Capsella rubella pathologic  
Crubella PWY-922 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s3093 0.5kb upstream 0.5kb upstream 3703 true scaffold_6: 14004228-14007930 Capsella rubella
Carub.0006s3093 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 14007431-14007930 Capsella rubella
Carub.0006s3093 0.5kb downstream 0.5kb downstream 3703 true scaffold_6: 14003728-14007430 Capsella rubella
Carub.0006s3093 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 14003728-14004227 Capsella rubella
Carub.0006s3093 1.0kb upstream 1.0kb upstream 4203 true scaffold_6: 14004228-14008430 Capsella rubella
Carub.0006s3093 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 14007431-14008430 Capsella rubella
Carub.0006s3093 1.0kb downstream 1.0kb downstream 4203 true scaffold_6: 14003228-14007430 Capsella rubella
Carub.0006s3093 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 14003228-14004227 Capsella rubella
Carub.0006s3093 2.0kb upstream 2.0kb upstream 5203 true scaffold_6: 14004228-14009430 Capsella rubella
Carub.0006s3093 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 14007431-14009430 Capsella rubella
Carub.0006s3093 2.0kb downstream 2.0kb downstream 5203 true scaffold_6: 14002228-14007430 Capsella rubella
Carub.0006s3093 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 14002228-14004227 Capsella rubella
Carub.0006s3093 5.0kb upstream 5.0kb upstream 8203 true scaffold_6: 14004228-14012430 Capsella rubella
Carub.0006s3093 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 14007431-14012430 Capsella rubella
Carub.0006s3093 5.0kb downstream 5.0kb downstream 8203 true scaffold_6: 13999228-14007430 Capsella rubella
Carub.0006s3093 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 13999228-14004227 Capsella rubella
Carub.0006s3093 10.0kb upstream 10.0kb upstream 13203 true scaffold_6: 14004228-14017430 Capsella rubella
Carub.0006s3093 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 14007431-14017430 Capsella rubella
Carub.0006s3093 10.0kb downstream 10.0kb downstream 13203 true scaffold_6: 13994228-14007430 Capsella rubella
Carub.0006s3093 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 13994228-14004227 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368774 5261 Brassicaceae View MSA
123839645 5264 Brassicales-Malvales View MSA
124341389 5266 SBM View MSA
124241910 5268 Malvidae View MSA
124060634 5270 Rosid View MSA
123746885 5271 Pentapetalae View MSA
122791824 5272 Eudicot View MSA
122042701 5273 Angiosperm View MSA
121346246 5274 Embryophyte View MSA
123424795 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain